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    CID7 CTC-interacting domain 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817168, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CID7
    Official Full Name
    CTC-interacting domain 7
    Primary source
    TAIR:AT2G26280
    Locus tag
    AT2G26280
    See related
    Araport:AT2G26280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CTC-interacting domain 7; T1D16.8; T1D16_8
    Summary
    smr (Small MutS Related) domain-containing protein mRNA, complete cds
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    Genomic context

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    See CID7 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (11187726..11191424, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene 3-ketoacyl-CoA synthase 10 Neighboring gene 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 Neighboring gene BRCT domain DNA repair protein Neighboring gene root-specific kinase 1 Neighboring gene G protein alpha subunit 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MATERNALLY EXPRESSED PAB C-TERMINAL, a novel imprinted gene in Arabidopsis, encodes the conserved C-terminal domain of polyadenylate binding proteins. Tiwari S, et al. Plant Cell, 2008 Sep. PMID 18796636, Free PMC Article
    2. Four distinct classes of proteins as interaction partners of the PABC domain of Arabidopsis thaliana Poly(A)-binding proteins. Bravo J, et al. Mol Genet Genomics, 2005 Feb. PMID 15650869
    3. LIK1, a CERK1-interacting kinase, regulates plant immune responses in Arabidopsis. Le MH, et al. PLoS One, 2014. PMID 25036661, Free PMC Article
    4. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    5. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336049.1
    NM_001336050.1
    NM_001336051.1
    NM_001336052.1
    NM_001336053.1
    NM_001336054.1
    NM_128185.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CTC-interacting domain 7
    NP_180196.1
    • CID7; FUNCTIONS IN: damaged DNA binding, protein binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor, putative (TAIR:AT5G58720.1); Has 309 Blast hits to 309 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 126; Plants - 79; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11187726..11191424 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128185.3 → NP_180196.1  CTC-interacting domain 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180196.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64843, Q0WQS0
      UniProtKB/TrEMBL
      A0A7G2EF34
      Conserved Domains (3) summary
      smart00463
      Location:482 → 567
      SMR; Small MutS-related domain
      cd14371
      Location:219 → 260
      CUE_CID7_like; CUE domain found in CTC-interacting domain proteins CID5, CID6, CID7 and similar proteins
      pfam08590
      Location:410 → 469
      DUF1771; Domain of unknown function (DUF1771)

    2. NM_001336050.1 → NP_001324896.1  CTC-interacting domain 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64843, Q0WQS0
      UniProtKB/TrEMBL
      A0A7G2EF34

    3. NM_001336049.1 → NP_001324897.1  CTC-interacting domain 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNY5, A0A1P8B1H7

    4. NM_001336051.1 → NP_001324893.1  CTC-interacting domain 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNY5, A0A1P8B1N0

    5. NM_001336052.1 → NP_001324892.1  CTC-interacting domain 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNY5, A0A1P8B1H7

    6. NM_001336054.1 → NP_001324894.1  CTC-interacting domain 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNY5, A0A1P8B1J3

    7. NM_001336053.1 → NP_001324895.1  CTC-interacting domain 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNY5, A0A1P8B1N0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64843.1

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