NAP1;2 nucleosome assembly protein 1;2 [Arabidopsis thaliana (thale cress)] - Gene

Summary

Official Symbol: NAP1;2
Official Full Name: nucleosome assembly protein 1;2
Primary source: TAIR:AT2G19480
Locus tag: AT2G19480
See related: Araport:AT2G19480
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F3P11.8; F3P11_8; NFA02; NFA2; nucleosome assembly protein 1;2; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2
Summary: This gene is predicted to encode a nucleosome assembly protein. Plant lines expressing an RNAi construct directed against this gene show a reduction in agrobacterium-mediated root transformation.
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Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Go to nucleotide: Graphics FASTA GenBank

NAP1 plays a positive regulatory role in plant rDNA transcription, possibly through derepression of the negative effect of the RPS6-HD2B complex.
Title: Identification of nucleosome assembly protein 1 (NAP1) as an interacting partner of plant ribosomal protein S6 (RPS6) and a positive regulator of rDNA transcription.

Submit: New GeneRIF Correction

Products	Interactant	Other Gene	Complex	Source	Pubs	Description

NM_001084448.2

NM_001202624.1

NM_127506.5

Function	Evidence Code	Pubs
enables histone binding	IDA Inferred from Direct Assay more info	PubMed
enables identical protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within DNA repair	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within DNA-mediated transformation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within double-strand break repair via homologous recombination	IGI Inferred from Genetic Interaction more info	PubMed
involved_in nucleosome assembly	IEA Inferred from Electronic Annotation more info
involved_in somatic cell DNA recombination	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in cytosol	HDA more info	PubMed
located_in mitochondrion	HDA more info	PubMed
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISM Inferred from Sequence Model more info

NP_001077917.1

nucleosome assembly protein 1;2 (NAP1;2); FUNCTIONS IN: binding, DNA binding; INVOLVED IN: DNA repair, DNA mediated transformation, nucleosome assembly; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: nucleosome assembly protein 1;3 (TAIR:AT5G56950.1); Has 62323 Blast hits to 20255 proteins in 1134 species: Archae - 188; Bacteria - 25543; Metazoa - 15336; Fungi - 5951; Plants - 2571; Viruses - 599; Other Eukaryotes - 12135 (source: NCBI BLink).

NP_001189553.1

nucleosome assembly protein 1;2 (NAP1;2); CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: nucleosome assembly protein 1;3 (TAIR:AT5G56950.1).

NP_179538.1

nucleosome assembly protein 1;2 (NAP1;2); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair, response to cadmium ion, DNA mediated transformation, nucleosome assembly; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: nucleosome assembly protein 1;3 (TAIR:AT5G56950.1); Has 64621 Blast hits to 20476 proteins in 1146 species: Archae - 195; Bacteria - 28068; Metazoa - 15040; Fungi - 6079; Plants - 2630; Viruses - 571; Other Eukaryotes - 12038 (source: NCBI BLink).