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    ATPase, F0/V0 complex, subunit C protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816150, updated on 3-Dec-2024

    Summary

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    Official Full Name
    ATPase, F0/V0 complex, subunit C protein
    Primary source
    TAIR:AT2G16510
    Locus tag
    AT2G16510
    See related
    Araport:AT2G16510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1P15.11; F1P15_11
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (7158991..7160934, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene arginine decarboxylase 1 Neighboring gene maternally expressed family protein Neighboring gene ncRNA Neighboring gene RING/U-box protein with C6HC-type zinc finger protein Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NaCl-induced expression of AtVHA-c5 gene in the roots plays a role in response of Arabidopsis to salt stress. Zhou A, et al. Plant Cell Rep, 2018 Mar. PMID 29307003
    2. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
    3. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
    4. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Results indicate that AtVHA-c5 plays a role in root response to NaCl stress by influencing H(+) and Na(+) fluxes.
      Title: NaCl-induced expression of AtVHA-c5 gene in the roots plays a role in response of Arabidopsis to salt stress.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_127205.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane HDA PubMed 
    part_of proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    ATPase, F0/V0 complex, subunit C protein
    NP_179244.1
    • ATPase, F0/V0 complex, subunit C protein; FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: vacuolar-type H(+)-ATPase C3 (TAIR:AT4G38920.1); Has 2722 Blast hits to 2495 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 468; Plants - 344; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7158991..7160934 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127205.5 → NP_179244.1  ATPase, F0/V0 complex, subunit C protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179244.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0DH92, P0DH93, P0DH94, P59227, Q6IDA4
      UniProtKB/TrEMBL
      A0A178VXD8, A0A5S9WYP5
      Conserved Domains (2) summary
      TIGR01100
      Location:12 → 120
      V_ATP_synt_C; vacuolar ATP synthase 16 kDa proteolipid subunit
      cd18176
      Location:88 → 155
      ATP-synt_Vo_c_ATP6C_rpt2; V-type proton ATPase 16 kDa proteolipid subunit (ATP6C/ATP6V0C/ATP6L/ATPL) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DH92.1
    P0DH93.1
    P0DH94.1

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials