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    CXIP4 CAX interacting protein 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817440, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CXIP4
    Official Full Name
    CAX interacting protein 4
    Primary source
    TAIR:AT2G28910
    Locus tag
    AT2G28910
    See related
    Araport:AT2G28910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CAX interacting protein 4; F8N16.20; F8N16_20
    Summary
    Encodes a CAX-interacting protein (CXIP4). The gene product is located in the nucleus of GFP-CXIP4-expressing yeast cells. When transiently expressed in the tobacco leaves, GFP-CXIP4 locates to the nucleus as well as in discrete areas of the cytoplasm (which do not overlap with mitochondria).
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    Genomic context

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    See CXIP4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (12415668..12417615, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene poltergeist like 4 Neighboring gene outer plastid envelope protein 16-1 Neighboring gene RING/U-box superfamily protein Neighboring gene protein kinase 1B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of CXIP4, a novel Arabidopsis protein that activates the H+/Ca2+ antiporter, CAX1. Cheng NH, et al. FEBS Lett, 2004 Feb 13. PMID 14960315
    2. Arabidopsis MAS2, an Essential Gene That Encodes a Homolog of Animal NF-κ B Activating Protein, Is Involved in 45S Ribosomal DNA Silencing. Sánchez-García AB, et al. Plant Cell, 2015 Jul. PMID 26139346, Free PMC Article
    3. Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. Marín-de la Rosa N, et al. Plant Physiol, 2014 Oct. PMID 25118255, Free PMC Article
    4. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336191.1
    NM_001336192.1
    NM_128450.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of calcium ion transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CAX interacting protein 4
    NP_565678.1
    • CAX interacting protein 4 (CXIP4); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of calcium ion transport, response to zinc ion; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); Has 71192 Blast hits to 36424 proteins in 1643 species: Archae - 52; Bacteria - 6434; Metazoa - 32894; Fungi - 8707; Plants - 4806; Viruses - 452; Other Eukaryotes - 17847 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12415668..12417615 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128450.2 → NP_565678.1  CAX interacting protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565678.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84Y18, Q8L8W3, Q9ZV23
      UniProtKB/TrEMBL
      A0A178VV16, A0A5S9X259, A0A654EX57
      Conserved Domains (1) summary
      pfam13917
      Location:79 → 98
      zf-CCHC_3; Zinc knuckle

    2. NM_001336191.1 → NP_001323649.1  CAX interacting protein 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84Y18, Q8L8W3, Q9ZV23
      UniProtKB/TrEMBL
      A0A178VV16, A0A5S9X259, A0A654EX57
      Conserved Domains (1) summary
      pfam13917
      Location:79 → 98
      zf-CCHC_3; Zinc knuckle

    3. NM_001336192.1 → NP_001323648.1  CAX interacting protein 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84Y18, Q8L8W3, Q9ZV23
      UniProtKB/TrEMBL
      A0A178VV16, A0A5S9X259, A0A654EX57
      Conserved Domains (1) summary
      pfam13917
      Location:79 → 98
      zf-CCHC_3; Zinc knuckle
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84Y18.2

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