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    RPL23AA ribosomal protein L23AA [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818531, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPL23AA
    Official Full Name
    ribosomal protein L23AA
    Primary source
    TAIR:AT2G39460
    Locus tag
    AT2G39460
    See related
    Araport:AT2G39460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A; ATRPL23A; F12L6.12; F12L6_12; RIBOSOMAL PROTEIN L23A; RIBOSOMAL PROTEIN L23A1; ribosomal protein L23AA; RPL23A; RPL23A1
    Summary
    Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.
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    Genomic context

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    See RPL23AA in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (16474149..16476141)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit Neighboring gene Cation efflux family protein Neighboring gene PsbP-like protein 2 Neighboring gene P-glycoprotein 6 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis paralogous genes RPL23aA and RPL23aB encode functionally equivalent proteins. Xiong W, et al. BMC Plant Biol, 2020 Oct 8. PMID 33032526, Free PMC Article
    2. Sequence context for transcription and translation of the Arabidopsis RPL23aA and RPL23aB paralogs. McIntosh KB, et al. Genome, 2011 Sep. PMID 21883051
    3. Transcript profiling demonstrates absence of dosage compensation in Arabidopsis following loss of a single RPL23a paralog. Degenhardt RF, et al. Planta, 2008 Sep. PMID 18566829
    4. Charge versus sequence for nuclear/nucleolar localization of plant ribosomal proteins. Savada RP, et al. Plant Mol Biol, 2013 Mar. PMID 23359052
    5. The 14-3-3 isoforms chi and epsilon differentially bind client proteins from developing Arabidopsis seed. Swatek KN, et al. J Proteome Res, 2011 Sep 2. PMID 21766784

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis paralogous genes RPL23aA and RPL23aB encode functionally equivalent proteins.
      Title: Arabidopsis paralogous genes RPL23aA and RPL23aB encode functionally equivalent proteins.
    2. Differential signal requirements for nuclear and nucleolar localization of the three Arabidopsis ribosomal proteins RPL23aA, RPL15A and RPS8A, are reported.
      Title: Charge versus sequence for nuclear/nucleolar localization of plant ribosomal proteins.
    3. core promoter elements couple RPL23aA and RPL23aB expression to the physiological status of the cell and hence are sufficient for inducing expression in mitotically active tissues and repressing expression in response to negative growth stimuli.
      Title: Sequence context for transcription and translation of the Arabidopsis RPL23aA and RPL23aB paralogs.
    4. Patterns of RPL23aA and RPL23aB transcript accumulation in wildtype plants suggest that paralogs respond coordinately to developmental and stress stimuli.
      Title: Transcript profiling demonstrates absence of dosage compensation in Arabidopsis following loss of a single RPL23a paralog.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001161093.2
    NM_129504.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to high light intensity IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to oxidative stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within translation TAS
    Traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    part_of large ribosomal subunit TAS
    Traceable Author Statement
    more info
    		  
    located_in nucleolus HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    ribosomal protein L23AA
    NP_001154565.1
    • ribosomal protein L23AA (RPL23AA); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, intracellular, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AB (TAIR:AT3G55280.2); Has 2634 Blast hits to 2634 proteins in 929 species: Archae - 307; Bacteria - 1168; Metazoa - 411; Fungi - 142; Plants - 120; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).
    NP_181478.1
    • ribosomal protein L23AA (RPL23AA); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AB (TAIR:AT3G55280.2); Has 2634 Blast hits to 2634 proteins in 929 species: Archae - 307; Bacteria - 1168; Metazoa - 411; Fungi - 142; Plants - 120; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16474149..16476141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161093.2 → NP_001154565.1  ribosomal protein L23AA [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154565.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48553, O80633, Q8LD46
      UniProtKB/TrEMBL
      A0A178VSK4, A0A5S9X5F4, A0A654F1L6
      Conserved Domains (1) summary
      PTZ00191
      Location:38 → 154
      PTZ00191; 60S ribosomal protein L23a; Provisional

    2. NM_129504.4 → NP_181478.1  ribosomal protein L23AA [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181478.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48553, O80633, Q8LD46
      UniProtKB/TrEMBL
      A0A178VSK4, A0A5S9X5F4, A0A654F1L6
      Conserved Domains (1) summary
      PTZ00191
      Location:38 → 154
      PTZ00191; 60S ribosomal protein L23a; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LD46.2

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