U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CDC48B cell division cycle 48B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814895, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CDC48B
    Official Full Name
    cell division cycle 48B
    Primary source
    TAIR:AT2G03670
    Locus tag
    AT2G03670
    See related
    Araport:AT2G03670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cell division cycle 48B; F19B11.12; F19B11_12; T4D2.160
    Summary
    CDC48 - like protein AAA-type ATPaseCell. division control protein 48 homolog B
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CDC48B in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (1117485..1120458)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene tRNA-Thr Neighboring gene Asparagine synthase family protein Neighboring gene ncRNA Neighboring gene spiral1 Neighboring gene coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001335198.1
    NM_126415.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    cell division cycle 48B
    NP_178463.1
    • cell division cycle 48B (CDC48B); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 56751 Blast hits to 29677 proteins in 3123 species: Archae - 2145; Bacteria - 19832; Metazoa - 8766; Fungi - 6476; Plants - 5731; Viruses - 66; Other Eukaryotes - 13735 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1117485..1120458
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126415.6 → NP_178463.1  cell division cycle 48B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178463.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZPR1
      UniProtKB/TrEMBL
      A0A178VXL7, A0A5S9WWY5
      Conserved Domains (1) summary
      TIGR01243
      Location:23 → 551
      CDC48; AAA family ATPase, CDC48 subfamily

    2. NM_001335198.1 → NP_001325037.1  cell division cycle 48B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1Y1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZPR1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools