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    LBD11 LOB domain-containing protein 11 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817398, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LBD11
    Official Full Name
    LOB domain-containing protein 11
    Primary source
    TAIR:AT2G28500
    Locus tag
    AT2G28500
    See related
    Araport:AT2G28500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LOB domain-containing protein 11; T17D12.6; T17D12_6
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    Genomic context

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    See LBD11 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (12186274..12188293, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNA-binding CRS1 / YhbY (CRM) domain protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene vacuolar proton ATPase A1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Growth's secret maestros: LBD11-ROS harmony drives vascular cambium activity in Arabidopsis. Kucukoglu Topcu M, et al. Mol Plant, 2023 Aug 7. PMID 37528579
    2. The LBD11-ROS feedback regulatory loop modulates vascular cambium proliferation and secondary growth in Arabidopsis. Dang TVT, et al. Mol Plant, 2023 Jul 3. PMID 37264569
    3. Cytokinins initiate secondary growth in the Arabidopsis root through a set of LBD genes. Ye L, et al. Curr Biol, 2021 Aug 9. PMID 34129827, Free PMC Article
    4. ZmMS1/ZmLBD30-orchestrated transcriptional regulatory networks precisely control pollen exine development. Hou Q, et al. Mol Plant, 2023 Aug 7. PMID 37501369
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Growth's secret maestros: LBD11-ROS harmony drives vascular cambium activity in Arabidopsis.
      Title: Growth's secret maestros: LBD11-ROS harmony drives vascular cambium activity in Arabidopsis.
    2. The LBD11-ROS feedback regulatory loop modulates vascular cambium proliferation and secondary growth in Arabidopsis.
      Title: The LBD11-ROS feedback regulatory loop modulates vascular cambium proliferation and secondary growth in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_128410.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of reactive oxygen species metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in root development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LOB domain-containing protein 11
    NP_180417.2
    • LOB domain-containing protein 11 (LBD11); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 1 (TAIR:AT1G07900.1); Has 1191 Blast hits to 1170 proteins in 85 species: Archae - 8; Bacteria - 66; Metazoa - 21; Fungi - 2; Plants - 1049; Viruses - 10; Other Eukaryotes - 35 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12186274..12188293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128410.3 → NP_180417.2  LOB domain-containing protein 11 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180417.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG61, Q9SK08
      UniProtKB/TrEMBL
      A0A5S9X273, A0A654EY48
      Conserved Domains (1) summary
      pfam03195
      Location:55 → 152
      LOB; Lateral organ boundaries (LOB) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SK08.2

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