GDCH glycine decarboxylase complex H [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: GDCH
Official Full Name: glycine decarboxylase complex H
Primary source: TAIR:AT2G35370
Locus tag: AT2G35370
See related: Araport:AT2G35370
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: glycine decarboxylase complex H; GLYCINE DECARBOXYLASE COMPLEX H PROTEIN
Summary: Encodes glycine decarboxylase complex H protein. Involved in photorespiration.
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Genomic context

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See GDCH in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 4

Sequence:: Chromosome: 2; NC_003071.7 (14891041..14892298)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_129089.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables glycine dehydrogenase (decarboxylating) activity	TAS Traceable Author Statement more info

Process	Evidence Code	Pubs
involved_in glycine decarboxylation via glycine cleavage system	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within glycine decarboxylation via glycine cleavage system	TAS Traceable Author Statement more info
acts_upstream_of_or_within photorespiration	TAS Traceable Author Statement more info

Component	Evidence Code	Pubs
located_in cytosol	HDA more info	PubMed
located_in endoplasmic reticulum	HDA more info	PubMed
part_of glycine cleavage complex	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	ISM Inferred from Sequence Model more info
located_in mitochondrion	TAS Traceable Author Statement more info
located_in nucleus	HDA more info	PubMed
located_in thylakoid	HDA more info	PubMed

General protein information

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Preferred Names: glycine decarboxylase complex H

NP_181080.1

glycine decarboxylase complex H (GDCH); FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity; INVOLVED IN: glycine decarboxylation via glycine cleavage system, photorespiration; LOCATED IN: thylakoid, mitochondrion, nucleus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G32470.1); Has 7139 Blast hits to 7139 proteins in 2207 species: Archae - 168; Bacteria - 4552; Metazoa - 189; Fungi - 126; Plants - 207; Viruses - 0; Other Eukaryotes - 1897 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

14891041..14892298

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_129089.2 → NP_181080.1 glycine decarboxylase complex H [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_181080.1

Status: REVIEWED

UniProtKB/Swiss-Prot

P25855, Q0WR60

UniProtKB/TrEMBL

A0A178VV72, A0A5S9WI52, A0A5S9X4A3

Conserved Domains (1) summary

PRK01202
Location:35 → 160

PRK01202; glycine cleavage system protein GcvH