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    carboxyl-terminal peptidase, putative (DUF239) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837618, updated on 18-Sep-2024

    Summary

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    Official Full Name
    carboxyl-terminal peptidase, putative (DUF239)
    Primary source
    TAIR:AT1G10750
    Locus tag
    AT1G10750
    See related
    Araport:AT1G10750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T16B5.11; T16B5_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (3574807..3578783, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Clathrin adaptor complexes medium subunit family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene maternally expressed family protein Neighboring gene maternally expressed family protein Neighboring gene ncRNA Neighboring gene Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001331925.1
    NM_100951.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    carboxyl-terminal peptidase, putative (DUF239)
    NP_172545.1
    • Protein of Unknown Function (DUF239); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 789 Blast hits to 744 proteins in 31 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 764; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3574807..3578783 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100951.4 → NP_172545.1  carboxyl-terminal peptidase, putative (DUF239) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172545.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W5T9, Q84JS7
      Conserved Domains (2) summary
      pfam03080
      Location:238 → 460
      DUF239; Domain of unknown function (DUF239)
      pfam14365
      Location:119 → 225
      DUF4409; Domain of unknown function (DUF4409)

    2. NM_001331925.1 → NP_001322157.1  carboxyl-terminal peptidase, putative (DUF239) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AT45
    Nucleotide Protein
    Heading Accession and Version

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