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    interferon-activable protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824374, updated on 18-Sep-2024

    Summary

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    Official Full Name
    interferon-activable protein
    Primary source
    TAIR:AT3G52110
    Locus tag
    AT3G52110
    See related
    Araport:AT3G52110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (19323750..19325895, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/FYVE/PHD-type zinc finger family protein Neighboring gene DIS3-exonuclease-like protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein gamma response 1 Neighboring gene SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339552.1
    NM_001339553.1
    NM_115070.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    interferon-activable protein
    NP_001190065.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages.
    NP_190779.3
    • unknown protein; Has 191 Blast hits to 174 proteins in 54 species: Archae - 0; Bacteria - 7; Metazoa - 45; Fungi - 7; Plants - 40; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19323750..19325895 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203136.1 → NP_001190065.1  interferon-activable protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190065.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCA0, F4J5R3

    2. NM_115070.5 → NP_190779.3  interferon-activable protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190779.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCA0, Q9SUZ4

    3. NM_001339552.1 → NP_001325946.1  interferon-activable protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMS5, A0A5S9XLR3, A0A654FF23

    4. NM_001339553.1 → NP_001325947.1  interferon-activable protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VEE8, A0A1I9LMS6
    Nucleotide Protein
    Heading Accession and Version

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