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    SNM1 DNA repair metallo-beta-lactamase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822280, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SNM1
    Official Full Name
    DNA repair metallo-beta-lactamase family protein
    Primary source
    TAIR:AT3G26680
    Locus tag
    AT3G26680
    See related
    Araport:AT3G26680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSNM1; SENSITIVE TO NITROGEN MUSTARD 1
    Summary
    involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage.
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    Genomic context

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    See SNM1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (9801169..9804282)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene glyceraldehyde 3-phosphate dehydrogenase A subunit Neighboring gene magnesium transporter, putative (DUF803) Neighboring gene LOB domain-containing protein 24 Neighboring gene ncRNA Neighboring gene nudix hydrolase homolog 13 Neighboring gene Protein kinase superfamily protein Neighboring gene cofactor assembly of complex C

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SNM-dependent recombinational repair of oxidatively induced DNA damage in Arabidopsis thaliana. Molinier J, et al. EMBO Rep, 2004 Oct. PMID 15448639, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001338816.1
    NM_001338817.1
    NM_001338818.1
    NM_180304.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA repair metallo-beta-lactamase family protein
    NP_001319649.1
    • SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: hydrolase activity; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 1210 Blast hits to 1152 proteins in 342 species: Archae - 175; Bacteria - 149; Metazoa - 283; Fungi - 254; Plants - 166; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).
    NP_001319650.1
    • SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: hydrolase activity; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_850635.1
    • SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: hydrolase activity; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 1211 Blast hits to 1153 proteins in 342 species: Archae - 176; Bacteria - 149; Metazoa - 283; Fungi - 254; Plants - 166; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9801169..9804282
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180304.2 → NP_850635.1  DNA repair metallo-beta-lactamase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850635.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q38961, Q96280
      UniProtKB/TrEMBL
      A0A5S9XFW9, B9DG72
      Conserved Domains (2) summary
      cd16273
      Location:142 → 290
      SNM1A-1C-like_MBL-fold; SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain
      pfam07522
      Location:360 → 466
      DRMBL; DNA repair metallo-beta-lactamase

    2. NM_001338816.1 → NP_001319649.1  DNA repair metallo-beta-lactamase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q38961, Q96280
      UniProtKB/TrEMBL
      A0A5S9XFW9, B9DG72
      Conserved Domains (2) summary
      cd16273
      Location:142 → 290
      SNM1A-1C-like_MBL-fold; SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain
      pfam07522
      Location:360 → 466
      DRMBL; DNA repair metallo-beta-lactamase

    3. NM_001338817.1 → NP_001319650.1  DNA repair metallo-beta-lactamase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q38961, Q96280
      UniProtKB/TrEMBL
      A0A5S9XFW9, B9DG72
      Conserved Domains (2) summary
      cd16273
      Location:142 → 290
      SNM1A-1C-like_MBL-fold; SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain
      pfam07522
      Location:360 → 466
      DRMBL; DNA repair metallo-beta-lactamase

    4. NM_001338818.1 → NP_001327585.1  DNA repair metallo-beta-lactamase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSS2, B9DG72
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q38961.1

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