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    hypothetical protein (DUF220) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838960, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF220)
    Primary source
    TAIR:AT1G23520
    Locus tag
    AT1G23520
    See related
    Araport:AT1G23520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28C11.15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (8343424..8344839, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene OBP32pep protein Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001198143.1
    NM_001332606.1
    NM_102201.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF220)
    NP_001185072.1
    • Domain of unknown function (DUF220); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23510.1).
    NP_173766.1
    • Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 145 Blast hits to 132 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8343424..8344839 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332607.1 → NP_001323392.1  hypothetical protein (DUF220) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AX24, A0A7G2DVN1

    2. NM_001198143.1 → NP_001185072.1  hypothetical protein (DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185072.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I682

    3. NM_102201.2 → NP_173766.1  hypothetical protein (DUF220) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173766.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EDG6, Q9ZUE2
      Conserved Domains (1) summary
      pfam02713
      Location:144 → 216
      DUF220; Domain of unknown function DUF220

    4. NM_001332606.1 → NP_001323393.1  hypothetical protein (DUF220) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWW3
    Nucleotide Protein
    Heading Accession and Version

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