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    ARPN plantacyanin [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814816, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ARPN
    Official Full Name
    plantacyanin
    Primary source
    TAIR:AT2G02850
    Locus tag
    AT2G02850
    See related
    Araport:AT2G02850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    plantacyanin; T17M13.2; T17M13_2
    Summary
    Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.
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    Genomic context

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    See ARPN in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (826299..827994, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nucleic acid/zinc ion-binding protein Neighboring gene ncRNA Neighboring gene sucrose transporter 2 Neighboring gene Galactose oxidase/kelch repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plantacyanin plays a role in reproduction in Arabidopsis. Dong J, et al. Plant Physiol, 2005 Jun. PMID 15908590, Free PMC Article
    2. AGO1 and AGO2 act redundantly in miR408-mediated Plantacyanin regulation. Maunoury N, et al. PLoS One, 2011. PMID 22174881, Free PMC Article
    3. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804
    4. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_126340.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within anther development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in extracellular matrix IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in secretory vesicle HDA PubMed 

    General protein information

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    Preferred Names
    plantacyanin
    NP_178388.1
    • plantacyanin (ARPN); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: pollination, anther development; LOCATED IN: middle lamella-containing extracellular matrix, apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT5G26330.1); Has 1174 Blast hits to 1133 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      826299..827994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126340.3 → NP_178388.1  plantacyanin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178388.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64499, Q8LG89, Q8S8T5
      UniProtKB/TrEMBL
      A0A178W0V0, A0A5S9WWU2
      Conserved Domains (1) summary
      cd11013
      Location:34 → 128
      Plantacyanin; Plantacyanin is a subclass of phytocyanins, plant type I copper proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LG89.2

    Gene LinkOut

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