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    F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817541, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/RNI-like superfamily protein
    Primary source
    TAIR:AT2G29910
    Locus tag
    AT2G29910
    See related
    Araport:AT2G29910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6K5.4; F6K5_4
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (12751147..12753241, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene villin-like 1 Neighboring gene Presenilin-2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene F-box/RNI-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336229.1
    NM_001336230.1
    NM_001336231.1
    NM_001336232.1
    NM_001336233.1
    NM_128545.6
    NM_179807.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box/RNI-like superfamily protein
    NP_180552.2
    • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3); Has 1593 Blast hits to 1569 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1593; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_850138.1
    • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3); Has 1572 Blast hits to 1552 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1572; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12751147..12753241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128545.6 → NP_180552.2  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180552.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PEY8, Q8GUS8, Q8GUS9, Q9SIK6
      UniProtKB/TrEMBL
      A0A654EXE3
      Conserved Domains (3) summary
      sd00032
      Location:127 → 151
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:5 → 40
      F-box; F-box domain
      pfam07723
      Location:151 → 176
      LRR_2; Leucine Rich Repeat

    2. NM_001336230.1 → NP_001323834.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PEY8, Q8GUS8, Q8GUS9, Q9SIK6
      UniProtKB/TrEMBL
      A0A654EXE3

    3. NM_179807.3 → NP_850138.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850138.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EXE3
      Conserved Domains (3) summary
      sd00032
      Location:127 → 151
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:5 → 40
      F-box; F-box domain
      pfam07723
      Location:151 → 176
      LRR_2; Leucine Rich Repeat

    4. NM_001336229.1 → NP_001323838.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EXE3

    5. NM_001336232.1 → NP_001323836.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AY80, A0A654EXE3

    6. NM_001336231.1 → NP_001323835.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PEY8, Q8GUS8, Q8GUS9, Q9SIK6
      UniProtKB/TrEMBL
      A0A654EXE3

    7. NM_001336233.1 → NP_001323837.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PEY8, Q8GUS8, Q8GUS9, Q9SIK6
      UniProtKB/TrEMBL
      A0A654EXE3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PEY8.1

    Gene LinkOut

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