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    JMJ18 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839963, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JMJ18
    Official Full Name
    Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
    Primary source
    TAIR:AT1G30810
    Locus tag
    AT1G30810
    See related
    Araport:AT1G30810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Jumonji domain-containing protein 18; T17H7.10; T17H7_10
    Summary
    JMJ18 encodes a novel JmjC domain- containing histone H3K4 demethylase.
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    Genomic context

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    See JMJ18 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (10936765..10942292, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Glycine-rich protein family Neighboring gene Fasciclin-like arabinogalactan family protein Neighboring gene uncharacterized protein Neighboring gene CTP synthase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A companion cell-dominant and developmentally regulated H3K4 demethylase controls flowering time in Arabidopsis via the repression of FLC expression. Yang H, et al. PLoS Genet, 2012. PMID 22536163, Free PMC Article
    2. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Causier B, et al. Plant Physiol, 2012 Jan. PMID 22065421, Free PMC Article
    3. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article
    4. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article
    5. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001198189.1
    NM_001332929.1
    NM_102818.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone H3K4 demethylase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
    NP_001185118.1
    • Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT2G34880.1).
    NP_001319118.1
    • Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), FY-rich, C-terminal subgroup (InterPro:IPR018516), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT2G34880.1); Has 2138 Blast hits to 1613 proteins in 188 species: Archae - 0; Bacteria - 2; Metazoa - 1141; Fungi - 449; Plants - 371; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10936765..10942292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332929.1 → NP_001319118.1  Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I6G4, Q8W4M0, Q9SY24
      UniProtKB/TrEMBL
      A0A5S9WIE6, A0A654EQ05
      Conserved Domains (5) summary
      smart00541
      Location:658 → 702
      FYRN; FY-rich domain, N-terminal region
      smart00545
      Location:59 → 99
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00542
      Location:708 → 794
      FYRC; FY-rich domain, C-terminal region
      pfam02373
      Location:294 → 410
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:519 → 571
      zf-C5HC2; C5HC2 zinc finger

    2. NM_001198189.1 → NP_001185118.1  Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185118.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I6G4, Q8W4M0, Q9SY24
      UniProtKB/TrEMBL
      A0A5S9WIE6, A0A654EQ05
      Conserved Domains (5) summary
      smart00541
      Location:658 → 702
      FYRN; FY-rich domain, N-terminal region
      smart00545
      Location:59 → 99
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00542
      Location:708 → 794
      FYRC; FY-rich domain, C-terminal region
      pfam02373
      Location:294 → 410
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:519 → 571
      zf-C5HC2; C5HC2 zinc finger

    3. NM_102818.7 → NP_174367.6  Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174367.6

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I6G4, Q8W4M0, Q9SY24
      UniProtKB/TrEMBL
      A0A5S9WIE6, A0A654EQ05
      Conserved Domains (5) summary
      smart00541
      Location:658 → 702
      FYRN; FY-rich domain, N-terminal region
      smart00545
      Location:59 → 99
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00542
      Location:708 → 794
      FYRC; FY-rich domain, C-terminal region
      pfam02373
      Location:294 → 410
      JmjC; JmjC domain, hydroxylase
      pfam02928
      Location:519 → 571
      zf-C5HC2; C5HC2 zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I6G4.1

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