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    VSR7 VACUOLAR SORTING RECEPTOR 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827757, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VSR7
    Official Full Name
    VACUOLAR SORTING RECEPTOR 7
    Primary source
    TAIR:AT4G20110
    Locus tag
    AT4G20110
    See related
    Araport:AT4G20110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    binding protein of 80 kDa 3;1; BP80-3;1; F1C12.2; VACUOLAR SORTING RECEPTOR 3;1; VACUOLAR SORTING RECEPTOR 7; VSR3;1
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    Genomic context

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    See VSR7 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (10875233..10878730)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF626) Neighboring gene PQ-loop repeat family protein / transmembrane family protein Neighboring gene tRNA-Thr Neighboring gene plastid transcriptionally active 14 Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene excitatory amino acid transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The plant vacuolar sorting receptor AtELP is involved in transport of NH(2)-terminal propeptide-containing vacuolar proteins in Arabidopsis thaliana. Ahmed SU, et al. J Cell Biol, 2000 Jun 26. PMID 10871276, Free PMC Article
    2. AtVPS45 complex formation at the trans-Golgi network. Bassham DC, et al. Mol Biol Cell, 2000 Jul. PMID 10888666, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203848.1
    NM_118130.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein targeting to vacuole TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    part_of Golgi transport complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in endosome HDA PubMed 
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    VACUOLAR SORTING RECEPTOR 7
    NP_001190777.1
    • VACUOLAR SORTING RECEPTOR 7 (VSR7); FUNCTIONS IN: calcium ion binding; INVOLVED IN: intracellular protein transport, protein targeting to vacuole; LOCATED IN: trans-Golgi network, integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 6 (TAIR:AT1G30900.1).
    NP_193744.1
    • VACUOLAR SORTING RECEPTOR 7 (VSR7); FUNCTIONS IN: calcium ion binding; INVOLVED IN: intracellular protein transport, N-terminal protein myristoylation, protein targeting to vacuole; LOCATED IN: trans-Golgi network, integral to plasma membrane, Golgi transport complex, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 6 (TAIR:AT1G30900.1); Has 14212 Blast hits to 6790 proteins in 278 species: Archae - 2; Bacteria - 151; Metazoa - 12853; Fungi - 13; Plants - 489; Viruses - 0; Other Eukaryotes - 704 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10875233..10878730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203848.1 → NP_001190777.1  VACUOLAR SORTING RECEPTOR 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190777.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XU57, F4JUS0
      Conserved Domains (3) summary
      cd00054
      Location:517 → 545
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd02125
      Location:53 → 176
      PA_VSR; PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most ...
      pfam12785
      Location:494 → 564
      VESA1_N; Variant erythrocyte surface antigen-1

    2. NM_118130.4 → NP_193744.1  VACUOLAR SORTING RECEPTOR 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193744.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49438, Q8L7E3
      UniProtKB/TrEMBL
      A0A5S9XU57
      Conserved Domains (3) summary
      cd00054
      Location:514 → 542
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd02125
      Location:53 → 176
      PA_VSR; PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most ...
      pfam12785
      Location:491 → 561
      VESA1_N; Variant erythrocyte surface antigen-1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L7E3.2

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