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    Armcx4 armadillo repeat containing, X-linked 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100359678, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Armcx4provided by RGD
    Official Full Name
    armadillo repeat containing, X-linked 4provided by RGD
    Primary source
    RGD:2325053
    See related
    EnsemblRapid:ENSRNOG00000043128 AllianceGenome:RGD:2325053
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human ARMCX4 (armadillo repeat containing X-linked 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 57.7), Brain (RPKM 53.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Armcx4 in Genome Data Viewer
    Location:
    Xq32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (102153743..102164173)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (97860526..97870912)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (105497277..105507636)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein H2 Neighboring gene cytochrome c oxidase subunit 7B, pseudogene 2 Neighboring gene ribosomal protein S29, pseudogene 8 Neighboring gene armadillo repeat containing, X-linked 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The novel testicular enrichment protein Cfap58 is required for Notch-associated ciliogenesis. Li ZZ, et al. Biosci Rep, 2020 Jan 31. PMID 31904090, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    armadillo repeat containing, X-linked 4; armadillo repeat-containing X-linked protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001433037.1 → NP_001419966.1  armadillo repeat containing, X-linked 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I5ZMH4

    2. NM_001433039.1 → NP_001419968.1  armadillo repeat containing, X-linked 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I5ZMH4

    3. NM_001433040.1 → NP_001419969.1  armadillo repeat containing, X-linked 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I5ZMH4

    4. NM_001433041.1 → NP_001419970.1  armadillo repeat containing, X-linked 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I5ZMH4

    5. NM_001433042.1 → NP_001419971.1  armadillo repeat containing, X-linked 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I5ZMH4

    6. NM_001433043.1 → NP_001419972.1  armadillo repeat containing, X-linked 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      A0A8I5ZMH4

    7. NM_001433044.1 → NP_001419973.1  armadillo repeat containing, X-linked 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      D3ZV39

    8. NM_001433045.1 → NP_001419974.1  armadillo repeat containing, X-linked 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      D3ZV39

    9. NM_001433046.1 → NP_001419975.1  armadillo repeat containing, X-linked 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021
      UniProtKB/TrEMBL
      D3ZV39

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      102153743..102164173
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006257237.5 → XP_006257299.1  armadillo repeat-containing X-linked protein 4 isoform X1

      Conserved Domains (4) summary
      pfam04826
      Location:2114 → 2365
      Arm_2; Armadillo-like
      NF033609
      Location:292 → 608
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
      NF033849
      Location:1033 → 1380
      ser_rich_anae_1; serine-rich protein
      cl11081
      Location:1345 → 1563
      dermokine

    2. XM_006257238.5 → XP_006257300.1  armadillo repeat-containing X-linked protein 4 isoform X1

      Conserved Domains (4) summary
      pfam04826
      Location:2114 → 2365
      Arm_2; Armadillo-like
      NF033609
      Location:292 → 608
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
      NF033849
      Location:1033 → 1380
      ser_rich_anae_1; serine-rich protein
      cl11081
      Location:1345 → 1563
      dermokine

    3. XM_063280385.1 → XP_063136455.1  armadillo repeat-containing X-linked protein 4 isoform X1

      Related
      ENSRNOP00000078017.1, ENSRNOT00000106559.2

    4. XM_006257241.5 → XP_006257303.1  armadillo repeat-containing X-linked protein 4 isoform X2

      Conserved Domains (1) summary
      pfam04826
      Location:2065 → 2316
      Arm_2; Armadillo-like

    5. XM_006257239.5 → XP_006257301.1  armadillo repeat-containing X-linked protein 4 isoform X1

      Conserved Domains (4) summary
      pfam04826
      Location:2114 → 2365
      Arm_2; Armadillo-like
      NF033609
      Location:292 → 608
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
      NF033849
      Location:1033 → 1380
      ser_rich_anae_1; serine-rich protein
      cl11081
      Location:1345 → 1563
      dermokine

    6. XM_063280387.1 → XP_063136457.1  armadillo repeat-containing X-linked protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZMH4

    7. XM_063280386.1 → XP_063136456.1  armadillo repeat-containing X-linked protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZMH4

    8. XM_063280390.1 → XP_063136460.1  armadillo repeat-containing X-linked protein 4 isoform X2

    9. XM_063280388.1 → XP_063136458.1  armadillo repeat-containing X-linked protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZMH4
      Related
      ENSRNOP00000082317.1, ENSRNOT00000105118.2

    10. XM_008773454.3 → XP_008771676.1  armadillo repeat-containing X-linked protein 4 isoform X1

      Related
      ENSRNOP00000079216.1, ENSRNOT00000116704.2
      Conserved Domains (4) summary
      pfam04826
      Location:2114 → 2365
      Arm_2; Armadillo-like
      NF033609
      Location:292 → 608
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
      NF033849
      Location:1033 → 1380
      ser_rich_anae_1; serine-rich protein
      cl11081
      Location:1345 → 1563
      dermokine

    11. XM_063280389.1 → XP_063136459.1  armadillo repeat-containing X-linked protein 4 isoform X2

    12. XM_039100645.2 → XP_038956573.1  armadillo repeat-containing X-linked protein 4 isoform X1

      Conserved Domains (4) summary
      pfam04826
      Location:2114 → 2365
      Arm_2; Armadillo-like
      NF033609
      Location:292 → 608
      MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
      NF033849
      Location:1033 → 1380
      ser_rich_anae_1; serine-rich protein
      cl11081
      Location:1345 → 1563
      dermokine
    Nucleotide Protein Strain
    Heading Accession and Version

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