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    pre-mRNA splicing factor domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819027, updated on 18-Sep-2024

    Summary

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    Official Full Name
    pre-mRNA splicing factor domain-containing protein
    Primary source
    TAIR:AT2G44195
    Locus tag
    AT2G44195
    See related
    Araport:AT2G44195
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4I1.13
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (18274723..18275792)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene methionine aminopeptidase 2A Neighboring gene ENDOSPERM DEFECTIVE protein (DUF566) Neighboring gene uncharacterized protein Neighboring gene pre-mRNA splicing factor domain-containing protein Neighboring gene carboxyl-terminal peptidase (DUF239)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_129983.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pre-mRNA splicing factor domain-containing protein
    NP_181948.2
    • CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor; CONTAINS InterPro DOMAIN/s: CBF1-interacting co-repressor CIR, N-terminal (InterPro:IPR019339), Pre-mRNA splicing factor (InterPro:IPR022209); BEST Arabidopsis thaliana protein match is: CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (TAIR:AT2G44200.1); Has 245 Blast hits to 245 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 66; Plants - 52; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18274723..18275792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129983.4 → NP_181948.2  pre-mRNA splicing factor domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181948.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F6Z7, A0MET4, Q1PEU6
      Conserved Domains (2) summary
      pfam10197
      Location:11 → 44
      Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR
      pfam12542
      Location:57 → 129
      CWC25; Pre-mRNA splicing factor
    Nucleotide Protein
    Heading Accession and Version

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