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    nucleic acid binding/RNA binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814787, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nucleic acid binding/RNA binding protein
    Primary source
    TAIR:AT2G02570
    Locus tag
    AT2G02570
    See related
    Araport:AT2G02570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8K22.13; T8K22_13
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (697943..700975, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene PIN domain-like family protein Neighboring gene cullin-associated and neddylation dissociated Neighboring gene cytochrome P450, family 71, subfamily B, polypeptide 9 Neighboring gene small multi-drug export protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global transcriptome analysis reveals circadian control of splicing events in Arabidopsis thaliana. Romanowski A, et al. Plant J, 2020 Jul. PMID 32314836
    2. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035878.2
    NM_001084402.1
    NM_126313.4
    NM_179596.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nucleic acid binding/RNA binding protein
    NP_001030955.1
    • nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001077871.1
    • nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
    NP_178361.2
    • nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
    NP_849927.1
    • nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor subgroup (InterPro:IPR018351), Tudor domain (InterPro:IPR002999), Survival motor neuron (InterPro:IPR010304); Has 339 Blast hits to 339 proteins in 158 species: Archae - 0; Bacteria - 5; Metazoa - 136; Fungi - 89; Plants - 55; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      697943..700975 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179596.3 → NP_849927.1  nucleic acid binding/RNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849927.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WWY8, A0A654F277, Q84K41
      Conserved Domains (1) summary
      smart00333
      Location:101 → 155
      TUDOR; Tudor domain

    2. NM_126313.4 → NP_178361.2  nucleic acid binding/RNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178361.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WWY8, A0A654F277, Q84K41
      Conserved Domains (1) summary
      smart00333
      Location:101 → 155
      TUDOR; Tudor domain

    3. NM_001035878.2 → NP_001030955.1  nucleic acid binding/RNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030955.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WWY8, A0A654F277, F4IR82
      Conserved Domains (1) summary
      smart00333
      Location:101 → 155
      TUDOR; Tudor domain

    4. NM_001084402.1 → NP_001077871.1  nucleic acid binding/RNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077871.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WWY8, A0A654F277, Q84K41
      Conserved Domains (1) summary
      smart00333
      Location:101 → 155
      TUDOR; Tudor domain
    Nucleotide Protein
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