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    XTH10 xyloglucan endotransglucosylase/hydrolase 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815950, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XTH10
    Official Full Name
    xyloglucan endotransglucosylase/hydrolase 10
    Primary source
    TAIR:AT2G14620
    Locus tag
    AT2G14620
    See related
    Araport:AT2G14620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6B13.14; T6B13_14; xyloglucan endotransglucosylase/hydrolase 10
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    Genomic context

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    See XTH10 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (6244772..6246279)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pathogenesis-related protein 1 Neighboring gene pseudo Neighboring gene ARABIDILLO protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001335429.1
    NM_127026.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    xyloglucan endotransglucosylase/hydrolase 10
    NP_179069.1
    • xyloglucan endotransglucosylase/hydrolase 10 (XTH10); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 7 (TAIR:AT4G37800.1); Has 2030 Blast hits to 2016 proteins in 268 species: Archae - 0; Bacteria - 182; Metazoa - 0; Fungi - 404; Plants - 1378; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      6244772..6246279
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335428.1 → NP_001324912.1  xyloglucan endotransglucosylase/hydrolase 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1L1

    2. NM_127026.4 → NP_179069.1  xyloglucan endotransglucosylase/hydrolase 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179069.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVK1
      UniProtKB/TrEMBL
      A0A5S9WY37, A0A654EXY6
      Conserved Domains (2) summary
      PLN03161
      Location:36 → 299
      PLN03161; Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
      cd02176
      Location:33 → 294
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16

    3. NM_001335429.1 → NP_001324911.1  xyloglucan endotransglucosylase/hydrolase 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1J8, A0A7G2E6C6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVK1.1

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