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    yacP-like NYN domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814772, updated on 18-Sep-2024

    Summary

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    Official Full Name
    yacP-like NYN domain protein
    Primary source
    TAIR:AT2G02410
    Locus tag
    AT2G02410
    See related
    Araport:AT2G02410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT2G02420; T16F16.20; T16F16_20
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (632634..634994)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase (class zeta) 2 Neighboring gene glutathione S-transferase zeta 1 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene miscRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202571.2
    NM_001335111.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    yacP-like NYN domain protein
    NP_001189500.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298).
    NP_001189501.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298).
    NP_178346.2
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298); Has 1151 Blast hits to 1151 proteins in 597 species: Archae - 0; Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      632634..634994
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335113.1 → NP_001324005.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYS9, A0A7G2E4X8

    2. NM_001335112.1 → NP_001324004.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYV9

    3. NM_001335114.1 → NP_001324002.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYT1, A0A7G2E6S1

    4. NM_001202572.1 → NP_001189501.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189501.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E4X8, F4IQD5
      Conserved Domains (1) summary
      pfam05991
      Location:68 → 234
      NYN_YacP; YacP-like NYN domain

    5. NM_001335115.1 → NP_001324003.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYR9

    6. NM_001335116.1 → NP_001324000.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYV8, A0A7G2E6S1
      Conserved Domains (1) summary
      cd10912
      Location:132 → 244
      PIN_YacP-like; PIN_domain of Bacillus subtilis YacP/Rae1 and related proteins

    7. NM_001335117.1 → NP_001324001.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYQ2, Q9ZVQ1

    8. NM_001335108.1 → NP_001323996.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYR9

    9. NM_001335109.1 → NP_001323997.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYV8, A0A7G2E6S1
      Conserved Domains (1) summary
      cd10912
      Location:132 → 244
      PIN_YacP-like; PIN_domain of Bacillus subtilis YacP/Rae1 and related proteins

    10. NM_126298.4 → NP_178346.2  yacP-like NYN domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178346.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ERC3, A0A7G2E6S1, Q8GZ36
      Conserved Domains (1) summary
      cd10912
      Location:132 → 273
      PIN_YacP-like; PIN_domain of Bacillus subtilis YacP/Rae1 and related proteins

    11. NM_001335110.1 → NP_001323998.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTM8, A0A1P8AYP8

    12. NM_001202571.2 → NP_001189500.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189500.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E4X8, F4IQD4
      Conserved Domains (1) summary
      pfam05991
      Location:85 → 251
      NYN_YacP; YacP-like NYN domain

    13. NM_001335111.1 → NP_001323999.1  yacP-like NYN domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYS9, A0A7G2E4X8
    Nucleotide Protein
    Heading Accession and Version

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