CDS4 cytidinediphosphate diacylglycerol synthase 4 [Arabidopsis thaliana (thale cress)] - Gene

Summary

Go to the top of the page Help

Official Symbol: CDS4
Official Full Name: cytidinediphosphate diacylglycerol synthase 4
Primary source: TAIR:AT2G45150
Locus tag: AT2G45150
See related: Araport:AT2G45150
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: cytidinediphosphate diacylglycerol synthase 4; T14P1.4
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

See CDS4 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 7

Sequence:: Chromosome: 2; NC_003071.7 (18613305..18615770)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The closely related genes CDS4 and CDS5 were found to encode plastidial cytidinediphosphate diacylglycerol synthase isozymes with similar catalytic properties and photoautotrophic growth requires at least one functional CDS4 or CDS5 allele. [CDS4]
Title: Two closely related genes of Arabidopsis encode plastidial cytidinediphosphate diacylglycerol synthases essential for photoautotrophic growth.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

NM_130078.4

Supported by ESTs:

NM_201962.2

Supported by ESTs:

NM_201963.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables phosphatidate cytidylyltransferase activity	IMP Inferred from Mutant Phenotype more info	PubMed

Process	Evidence Code	Pubs
involved_in CDP-diacylglycerol biosynthetic process	IEA Inferred from Electronic Annotation more info
involved_in phosphatidylglycerol biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in chloroplast thylakoid membrane	IMP Inferred from Mutant Phenotype more info	PubMed
located_in plasma membrane	ISM Inferred from Sequence Model more info
located_in plastid	IDA Inferred from Direct Assay more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: cytidinediphosphate diacylglycerol synthase 4

NP_566035.2

cytidinediphosphate diacylglycerol synthase 4 (CDS4); CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: cytidinediphosphate diacylglycerol synthase 5 (TAIR:AT3G60620.1); Has 7499 Blast hits to 7494 proteins in 2620 species: Archae - 2; Bacteria - 5196; Metazoa - 180; Fungi - 137; Plants - 143; Viruses - 0; Other Eukaryotes - 1841 (source: NCBI BLink).

NP_973691.2

cytidinediphosphate diacylglycerol synthase 4; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: cytidinediphosphate diacylglycerol synthase 5 (TAIR:AT3G60620.1); Has 308 Blast hits to 308 proteins in 84 species: Archae - 0; Bacteria - 123; Metazoa - 0; Fungi - 4; Plants - 54; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).

NP_973692.1

cytidinediphosphate diacylglycerol synthase 4; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: cytidinediphosphate diacylglycerol synthase 5 (TAIR:AT3G60620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

18613305..18615770

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_130078.4 → NP_566035.2 cytidinediphosphate diacylglycerol synthase 4 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_566035.2

Status: REVIEWED

UniProtKB/Swiss-Prot

F4IW27, F4IW28, Q0V7V3, Q94A03

Conserved Domains (1) summary

PLN02953
Location:40 → 430

PLN02953; phosphatidate cytidylyltransferase
NM_201962.2 → NP_973691.2 cytidinediphosphate diacylglycerol synthase 4 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_973691.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q94A03

Conserved Domains (1) summary

cl21502
Location:40 → 321

CTP_transf_1; Cytidylyltransferase family
NM_201963.2 → NP_973692.1 cytidinediphosphate diacylglycerol synthase 4 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_973692.1

Status: REVIEWED

UniProtKB/Swiss-Prot

F4IW27, F4IW28, Q0V7V3, Q94A03

Conserved Domains (1) summary

cl21502
Location:1 → 382

CTP_transf_1; Cytidylyltransferase family