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    Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814872, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ankyrin repeat family protein
    Primary source
    TAIR:AT2G03430
    Locus tag
    AT2G03430
    See related
    Araport:AT2G03430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T4M8.14; T4M8_14
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (1036008..1037675, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uvrB/uvrC motif-containing protein Neighboring gene uncharacterized protein Neighboring gene Mo25 family protein Neighboring gene nodulin-related protein 1 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_126394.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    Ankyrin repeat family protein
    NP_178442.2
    • Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1036008..1037675 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126394.5 → NP_178442.2  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178442.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQH0, Q8GZ22
      Conserved Domains (3) summary
      COG0666
      Location:13 → 210
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:82 → 113
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:87 → 179
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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