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    MEF9 mitochondrial editing factor 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842523, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MEF9
    Official Full Name
    mitochondrial editing factor 9
    Primary source
    TAIR:AT1G62260
    Locus tag
    AT1G62260
    See related
    Araport:AT1G62260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19K23.18; F19K23_18; mitochondrial editing factor 9
    Summary
    Encodes MITOCHONDRIAL EDITING FACTOR 9 (MEF9), an E subclass PPR protein required for RNA editing.
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    Genomic context

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    See MEF9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (22997755..22999829, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene orotidine 5'-phosphate decarboxylase Neighboring gene uncharacterized protein Neighboring gene SLAC1 homologue 4 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis. Takenaka M. Plant Physiol, 2010 Feb. PMID 20018598, Free PMC Article
    2. Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants. Takenaka M, et al. Proc Natl Acad Sci U S A, 2012 Mar 27. PMID 22411807, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MITOCHONDRIAL EDITING FACTOR9 is required for RNA editing of the site nad7-200 in the nad7 mitochondrial mRNA. MEF9 does not affect RNA editing in plastids. [MEF9]
      Title: MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104906.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within cytidine to uridine editing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    mitochondrial editing factor 9
    NP_176416.1
    • mitochondrial editing factor 9 (MEF9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytidine to uridine editing; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 48341 Blast hits to 14172 proteins in 260 species: Archae - 3; Bacteria - 22; Metazoa - 134; Fungi - 182; Plants - 47365; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22997755..22999829 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104906.2 → NP_176416.1  mitochondrial editing factor 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176416.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04590
      UniProtKB/TrEMBL
      A0A178WLW5
      Conserved Domains (2) summary
      PLN03077
      Location:38 → 653
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:73 → 100
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04590.1

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