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    NIP2 NEP-interacting protein 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816282, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NIP2
    Official Full Name
    NEP-interacting protein 2
    Primary source
    TAIR:AT2G17730
    Locus tag
    AT2G17730
    See related
    Araport:AT2G17730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NEP-interacting protein 2; T17A5.9; T17A5_9
    Summary
    Intrinsic thylakoid membrane protein that fixes RPOTmp on the stromal side of the thylakoid membrane.
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    Genomic context

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    See NIP2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (7703805..7705831)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene NEP-interacting protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Intraplastidial trafficking of a phage-type RNA polymerase is mediated by a thylakoid RING-H2 protein. Azevedo J, et al. Proc Natl Acad Sci U S A, 2008 Jul 1. PMID 18567673, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202615.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NEP-interacting protein 2
    NP_001189544.1
    • NEP-interacting protein 2 (NIP2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G35840.1).
    NP_179364.2
    • NEP-interacting protein 2 (NIP2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G35840.1); Has 9242 Blast hits to 9216 proteins in 266 species: Archae - 0; Bacteria - 2; Metazoa - 2260; Fungi - 688; Plants - 5081; Viruses - 18; Other Eukaryotes - 1193 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7703805..7705831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127327.4 → NP_179364.2  NEP-interacting protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179364.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GT74, Q8GWW3
      UniProtKB/TrEMBL
      A0A178VVH3, A0A5S9WZ42
      Conserved Domains (2) summary
      cd16454
      Location:196 → 238
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
      pfam13441
      Location:56 → 91
      Gly-zipper_YMGG; YMGG-like Gly-zipper

    2. NM_001202615.1 → NP_001189544.1  NEP-interacting protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189544.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4INM3
      Conserved Domains (2) summary
      pfam13436
      Location:56 → 90
      Gly-zipper_OmpA; Glycine-zipper containing OmpA-like membrane domain
      pfam13639
      Location:194 → 231
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GT74.1

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