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    RTNLB3 Reticulan like protein B3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842713, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RTNLB3
    Official Full Name
    Reticulan like protein B3
    Primary source
    TAIR:AT1G64090
    Locus tag
    AT1G64090
    See related
    Araport:AT1G64090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22C12.15; F22C12_15; Reticulan like protein B3
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    Genomic context

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    See RTNLB3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (23789062..23791229)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene membrane-associated kinase regulator Neighboring gene pentatricopeptide (PPR) repeat-containing protein Neighboring gene NAC domain containing protein 27 Neighboring gene Putative membrane lipoprotein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Reticulomics: Protein-Protein Interaction Studies with Two Plasmodesmata-Localized Reticulon Family Proteins Identify Binding Partners Enriched at Plasmodesmata, Endoplasmic Reticulum, and the Plasma Membrane. Kriechbaumer V, et al. Plant Physiol, 2015 Nov. PMID 26353761, Free PMC Article
    2. Putting the Squeeze on Plasmodesmata: A Role for Reticulons in Primary Plasmodesmata Formation. Knox K, et al. Plant Physiol, 2015 Aug. PMID 26084919, Free PMC Article
    3. Arabidopsis RETICULON-LIKE3 (RTNLB3) and RTNLB8 Participate in Agrobacterium-Mediated Plant Transformation. Huang FC, et al. Int J Mol Sci, 2018 Feb 24. PMID 29495267, Free PMC Article
    4. Five Arabidopsis reticulon isoforms share endoplasmic reticulum location, topology, and membrane-shaping properties. Sparkes I, et al. Plant Cell, 2010 Apr. PMID 20424177, Free PMC Article
    5. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RTNLB proteins, in addition to a role in ER modeling, may play important roles in linking the cortical ER to the plasma membrane.
      Title: Reticulomics: Protein-Protein Interaction Studies with Two Plasmodesmata-Localized Reticulon Family Proteins Identify Binding Partners Enriched at Plasmodesmata, Endoplasmic Reticulum, and the Plasma Membrane.
    2. Data show that reticulon (RTNLB) family proteins RTNLB3 and RTNLB6 are recruited to the cell plate at late telophase, when primary plasmodesmata (PD) are formed, and remain associated with primary PD in the mature cell wall.
      Title: Putting the Squeeze on Plasmodesmata: A Role for Reticulons in Primary Plasmodesmata Formation.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105082.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum tubular network organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with cell plate IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasmic side of endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    colocalizes_with endoplasmic reticulum lumen IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum tubular network IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 
    located_in plasmodesma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    colocalizes_with plasmodesmatal desmotubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Reticulan like protein B3
    NP_001185307.1
    • Reticulan like protein B3 (RTNLB3); CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 3 (TAIR:AT5G41600.1).
    NP_176592.1
    • Reticulan like protein B3 (RTNLB3); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 3 (TAIR:AT5G41600.1); Has 1238 Blast hits to 1236 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 713; Fungi - 17; Plants - 487; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23789062..23791229
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198378.2 → NP_001185307.1  Reticulan like protein B3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185307.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WA77, F4I596
      Conserved Domains (1) summary
      pfam02453
      Location:80 → 236
      Reticulon; Reticulon

    2. NM_105082.5 → NP_176592.1  Reticulan like protein B3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176592.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SH59
      UniProtKB/TrEMBL
      A0A178WA77, A0A654EM94
      Conserved Domains (1) summary
      pfam02453
      Location:64 → 220
      Reticulon
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SH59.1

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