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    PUM9 pumilio 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840477, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PUM9
    Official Full Name
    pumilio 9
    Primary source
    TAIR:AT1G35730
    Locus tag
    AT1G35730
    See related
    Araport:AT1G35730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    APUM9; F14D7.3; F14D7_3; pumilio 9
    Summary
    Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
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    Genomic context

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    See PUM9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (13227137..13229931, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene kinase family with leucine-rich repeat domain-containing protein Neighboring gene annexin 1 Neighboring gene pseudo Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional and molecular characterization of the conserved Arabidopsis PUMILIO protein, APUM9. Nyikó T, et al. Plant Mol Biol, 2019 May. PMID 30868544, Free PMC Article
    2. Reduced Dormancy5 encodes a protein phosphatase 2C that is required for seed dormancy in Arabidopsis. Xiang Y, et al. Plant Cell, 2014 Nov. PMID 25415980, Free PMC Article
    3. The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization. Tam PP, et al. BMC Plant Biol, 2010 Mar 9. PMID 20214804, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_103275.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of seed dormancy process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pumilio 9
    NP_174811.1
    • pumilio 9 (PUM9); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 10 (TAIR:AT1G35750.1); Has 2809 Blast hits to 1683 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 628; Fungi - 837; Plants - 667; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      13227137..13229931 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333166.1 → NP_001322303.1  pumilio 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4U4, A0A1P8ATL9

    2. NM_103275.1 → NP_174811.1  pumilio 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174811.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PFN9, Q9LP23
      UniProtKB/TrEMBL
      A0A178W4U4
      Conserved Domains (1) summary
      cd07920
      Location:245 → 559
      Pumilio; Pumilio-family RNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PFN9.1

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