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    translation initiation factor 3 (IF-3) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840338, updated on 18-Sep-2024

    Summary

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    Official Full Name
    translation initiation factor 3 (IF-3) family protein
    Primary source
    TAIR:AT1G34360
    Locus tag
    AT1G34360
    See related
    Araport:AT1G34360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7P12.8; F7P12_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (12542796..12546244)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tmem18 Neighboring gene forkhead-associated (FHA) domain-containing protein Neighboring gene ncRNA Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene 5'-3' exonuclease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Translation initiation factor 3 families: what are their roles in regulating cyanobacterial and chloroplast gene expression? Nesbit AD, et al. Photosynth Res, 2015 Oct. PMID 25630975
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001333099.1
    NM_001333100.1
    NM_103159.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    translation initiation factor 3 (IF-3) family protein
    NP_174696.2
    • translation initiation factor 3 (IF-3) family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, N-terminal (InterPro:IPR019814), Translation initiation factor 3, C-terminal (InterPro:IPR019815), Translation initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: Translation initiation factor 3 protein (TAIR:AT2G24060.1); Has 45300 Blast hits to 30219 proteins in 3054 species: Archae - 48; Bacteria - 10638; Metazoa - 13046; Fungi - 7368; Plants - 4879; Viruses - 1090; Other Eukaryotes - 8231 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      12542796..12546244
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103159.4 → NP_174696.2  translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174696.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NLP2, Q9C8N4
      UniProtKB/TrEMBL
      A0A654EKE5
      Conserved Domains (2) summary
      cl25764
      Location:332 → 467
      PAT1; Topoisomerase II-associated protein PAT1
      cl27649
      Location:81 → 199
      IF3_C; Translation initiation factor IF-3, C-terminal domain

    2. NM_001333099.1 → NP_001322462.1  translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AU34, A0A654EKE5

    3. NM_001333100.1 → NP_001322463.1  translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AU23, A0A654EKE5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NLP2.1

    Gene LinkOut

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