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    CYP89A9 cytochrome P450, family 87, subfamily A, polypeptide 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821250, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CYP89A9
    Official Full Name
    cytochrome P450, family 87, subfamily A, polypeptide 9
    Primary source
    TAIR:AT3G03470
    Locus tag
    AT3G03470
    See related
    Araport:AT3G03470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''cytochrome P450; cytochrome P450; family 87; polypeptide 9; polypeptide 9''; subfamily A; T21P5.11; T21P5_11
    Summary
    member of CYP89A
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    Genomic context

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    See CYP89A9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (824552..826585, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RGA-like 2 Neighboring gene mediator of RNA polymerase II transcription subunit-like protein Neighboring gene acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase Neighboring gene peroxin 19-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cytochrome P450 CYP89A9 is involved in the formation of major chlorophyll catabolites during leaf senescence in Arabidopsis. Christ B, et al. Plant Cell, 2013 May. PMID 23723324, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_111218.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables NADPH-hemoprotein reductase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables fluorescent chlorophyll catabolite monooxygenase (deformylase) activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables fluorescent chlorophyll catabolite monooxygenase (deformylase) activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within chlorophyll a catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in chlorophyll catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome P450, family 87, subfamily A, polypeptide 9
    NP_186997.1
    • ''cytochrome P450, family 87, subfamily A, polypeptide 9'' (CYP89A9); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 87, subfamily A, polypeptide 6 (TAIR:AT1G64940.1); Has 30488 Blast hits to 30273 proteins in 1588 species: Archae - 47; Bacteria - 2858; Metazoa - 11557; Fungi - 5907; Plants - 9145; Viruses - 0; Other Eukaryotes - 974 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      824552..826585 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111218.4 → NP_186997.1  cytochrome P450, family 87, subfamily A, polypeptide 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_186997.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q944R6, Q9SRQ1
      UniProtKB/TrEMBL
      A0A178VBU8, A0A5S9X8T1, A0A654F4W3
      Conserved Domains (1) summary
      cd11075
      Location:65 → 503
      CYP77_89; cytochrome P450 families 77 and 89, and similar cytochrome P450s
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SRQ1.1

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