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    RABE1e RAB GTPase homolog E1E [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820148, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RABE1e
    Official Full Name
    RAB GTPase homolog E1E
    Primary source
    TAIR:AT3G09900
    Locus tag
    AT3G09900
    See related
    Araport:AT3G09900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATRAB8E; ATRABE1E; RAB GTPase homolog E1E
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    Genomic context

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    See RABE1e in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (3034477..3036961)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene Protein phosphatase 2A regulatory B subunit family protein Neighboring gene Ankyrin repeat family protein Neighboring gene RAB GTPase homolog C2B Neighboring gene miscRNA Neighboring gene phosphatidyl inositol monophosphate 5 kinase Neighboring gene induced by phosphate starvation1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis Rab-E GTPases exhibit a novel interaction with a plasma-membrane phosphatidylinositol-4-phosphate 5-kinase. Camacho L, et al. J Cell Sci, 2009 Dec 1. PMID 19903693
    2. CHARACTERIZATION OF A RABE (RAS GENE FROM RAT BRAIN E) GTPASE EXPRESSED DURING MORPHOGENESIS IN THE UNICELLULAR GREEN ALGA MICRASTERIAS DENTICULATA (ZYGNEMATOPHYCEAE, STREPTOPHYTA)(1). Vannerum K, et al. J Phycol, 2012 Jun. PMID 27011085
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_111825.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    RAB GTPase homolog E1E
    NP_187601.1
    • RAB GTPase homolog E1E (RABE1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 8C (TAIR:AT5G03520.1); Has 29798 Blast hits to 29728 proteins in 826 species: Archae - 21; Bacteria - 199; Metazoa - 15588; Fungi - 4257; Plants - 3488; Viruses - 20; Other Eukaryotes - 6225 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3034477..3036961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111825.4 → NP_187601.1  RAB GTPase homolog E1E [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187601.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SF91
      UniProtKB/TrEMBL
      A0A178V789, A0A5S9XBT0
      Conserved Domains (1) summary
      cd01867
      Location:13 → 180
      Rab8_Rab10_Rab13_like; Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SF91.1

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