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    PPR40 pentatricopeptide (PPR) domain protein 40 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820944, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PPR40
    Official Full Name
    pentatricopeptide (PPR) domain protein 40
    Primary source
    TAIR:AT3G16890
    Locus tag
    AT3G16890
    See related
    Araport:AT3G16890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    pentatricopeptide (PPR) domain protein 40
    Summary
    Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase).
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    Genomic context

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    See PPR40 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (5767977..5770488, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 17 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Cysteine-rich protein Neighboring gene LURP-one-like protein (DUF567) Neighboring gene acyl-activating enzyme 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis PPR40 connects abiotic stress responses to mitochondrial electron transport. Zsigmond L, et al. Plant Physiol, 2008 Apr. PMID 18305213, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338266.1
    NM_112565.2

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial ATP synthesis coupled electron transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    pentatricopeptide (PPR) domain protein 40
    NP_188314.1
    • pentatricopeptide (PPR) domain protein 40 (PPR40); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 55842 Blast hits to 14078 proteins in 304 species: Archae - 4; Bacteria - 51; Metazoa - 561; Fungi - 1019; Plants - 52283; Viruses - 0; Other Eukaryotes - 1924 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5767977..5770488 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112565.2 → NP_188314.1  pentatricopeptide (PPR) domain protein 40 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188314.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LSQ2
      UniProtKB/TrEMBL
      A0A178VFN1, A0A5S9XD13
      Conserved Domains (4) summary
      PLN03218
      Location:178 → 584
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:601 → 635
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:497 → 524
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:563 → 610
      PPR_2; PPR repeat family

    2. NM_001338266.1 → NP_001326054.1  pentatricopeptide (PPR) domain protein 40 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LN42
      Conserved Domains (3) summary
      PLN03218
      Location:49 → 455
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:368 → 395
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:434 → 481
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LSQ2.1

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