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    TRM9 RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840048, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM9
    Official Full Name
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Primary source
    TAIR:AT1G31600
    Locus tag
    AT1G31600
    See related
    Araport:AT1G31600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis thaliana tRNA methyltransferase 9; AT1G31610; AtTRM9; F27M3.19; F27M3_19; tRNA methyltransferase 9
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    Genomic context

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    See TRM9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (11312961..11316582, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ECS1 Neighboring gene uncharacterized protein Neighboring gene AGAMOUS-like 86

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Roles of Trm9- and ALKBH8-like proteins in the formation of modified wobble uridines in Arabidopsis tRNA. Leihne V, et al. Nucleic Acids Res, 2011 Sep 1. PMID 21653555, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332970.1
    NM_102896.3
    NM_202216.1
    NM_202217.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in demethylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within tRNA wobble uridine modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding (RRM/RBD/RNP motifs) family protein
    NP_174442.2
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G02485.1); Has 662 Blast hits to 662 proteins in 169 species: Archae - 0; Bacteria - 66; Metazoa - 255; Fungi - 80; Plants - 148; Viruses - 3; Other Eukaryotes - 110 (source: NCBI BLink).
    NP_973945.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G02485.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973946.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G02485.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11312961..11316582 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102896.3 → NP_174442.2  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174442.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DUI0
      Conserved Domains (2) summary
      cd00590
      Location:111 → 183
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl21496
      Location:212 → 410
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    2. NM_001332970.1 → NP_001322355.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8ATR1, Q56YW5, Q8RWY1, Q9C6V1
      UniProtKB/TrEMBL
      A0A178W6K8, A0A7G2DUI0
      Conserved Domains (2) summary
      cl21496
      Location:127 → 325
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
      cl25887
      Location:20 → 91
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    3. NM_202216.1 → NP_973945.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973945.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W642, A0A7G2DUB9, F4I9F8
      Conserved Domains (2) summary
      cd00590
      Location:26 → 98
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl21496
      Location:125 → 323
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    4. NM_202217.1 → NP_973946.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973946.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DUI0
      Conserved Domains (2) summary
      cd00590
      Location:111 → 183
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl21496
      Location:212 → 410
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RWY1.2

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