NUDX25 nudix hydrolase homolog 25 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: NUDX25
Official Full Name: nudix hydrolase homolog 25
Primary source: TAIR:AT1G30110
Locus tag: AT1G30110
See related: Araport:AT1G30110
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATNUDX25; nudix hydrolase homolog 25; T2H7.9; T2H7_9
Summary: Encodes a ppGpp pyrophosphohydrolase.
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Genomic context

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See NUDX25 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 7

Sequence:: Chromosome: 1; NC_003070.9 (10581735..10584152)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

Orthologs from OrthoDB

NM_001198185.1

Supported by ESTs:

NM_102750.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	IDA Inferred from Direct Assay more info	PubMed
enables guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within diadenosine tetraphosphate catabolic process	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within nucleoside phosphate metabolic process	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: nudix hydrolase homolog 25

NP_001185114.1

nudix hydrolase homolog 25 (NUDX25); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase (InterPro:IPR020476), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 26 (TAIR:AT3G10620.1).

NP_174303.1

nudix hydrolase homolog 25 (NUDX25); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase (InterPro:IPR020476), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 26 (TAIR:AT3G10620.1); Has 5811 Blast hits to 5811 proteins in 1324 species: Archae - 37; Bacteria - 3778; Metazoa - 23; Fungi - 1; Plants - 106; Viruses - 0; Other Eukaryotes - 1866 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

10581735..10584152

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001198185.1 → NP_001185114.1 nudix hydrolase homolog 25 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001185114.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q0WMS9, Q9C6Z2

UniProtKB/TrEMBL

A0A178WMZ6, A0A5S9WD42

Conserved Domains (1) summary

cd03671
Location:7 → 157

Ap4A_hydrolase_plant_like; Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant ...
NM_102750.5 → NP_174303.1 nudix hydrolase homolog 25 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_174303.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q0WMS9, Q9C6Z2

UniProtKB/TrEMBL

A0A178WMZ6, A0A5S9WD42

Conserved Domains (1) summary

cd03671
Location:7 → 157

Ap4A_hydrolase_plant_like; Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant ...