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    trichohyalin-like protein (DUF3444) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828911, updated on 18-Sep-2024

    Summary

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    Official Full Name
    trichohyalin-like protein (DUF3444)
    Primary source
    TAIR:AT4G27980
    Locus tag
    AT4G27980
    See related
    Araport:AT4G27980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T13J8.90; T13J8_90
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (13921292..13923570)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme 9 Neighboring gene SLAC1 homologue 2 Neighboring gene YGGT family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341896.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    trichohyalin-like protein (DUF3444)
    NP_001320079.1
    • CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT3G04960.1); Has 76225 Blast hits to 44081 proteins in 2453 species: Archae - 1073; Bacteria - 11388; Metazoa - 35898; Fungi - 5511; Plants - 3905; Viruses - 204; Other Eukaryotes - 18246 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13921292..13923570
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341897.1 → NP_001328607.1  trichohyalin-like protein (DUF3444) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V490, A0A1P8B553, A0A384KHS1, A0A5S9XWX3
      Conserved Domains (2) summary
      COG1196
      Location:52 → 290
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam11926
      Location:350 → 549
      DUF3444; Domain of unknown function (DUF3444)

    2. NM_001341898.1 → NP_001328606.1  trichohyalin-like protein (DUF3444) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V2L1, A0A1P8B587, A0A384LF68, A0A5S9XWX3
      Conserved Domains (2) summary
      COG1196
      Location:51 → 289
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam11926
      Location:349 → 548
      DUF3444; Domain of unknown function (DUF3444)

    3. NM_001341896.1 → NP_001320079.1  trichohyalin-like protein (DUF3444) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V295, A0A5S9XWX3, Q9SUE1
    Nucleotide Protein
    Heading Accession and Version

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