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    choline monooxygenase, putative (CMO-like) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829111, updated on 18-Sep-2024

    Summary

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    Official Full Name
    choline monooxygenase, putative (CMO-like)
    Primary source
    TAIR:AT4G29890
    Locus tag
    AT4G29890
    See related
    Araport:AT4G29890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27B13.130; F27B13_130
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (14608833..14610998)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Oligosaccharyltransferase complex/magnesium transporter family protein Neighboring gene plant intracellular ras group-related LRR 7 Neighboring gene autoinhibited Ca(2+)-ATPase 10 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional characterization of choline monooxygenase, an enzyme for betaine synthesis in plants. Hibino T, et al. J Biol Chem, 2002 Nov 1. PMID 12192001
    2. AtMYB2 transcription factor can interact with the CMO promoter and regulate its downstream gene expression. Yu L, et al. Biotechnol Lett, 2012 Sep. PMID 22714268
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The AtMYB2 transcription factor can therefore interact with the choline monooxygenase promoter directly and regulate its downstream gene expression.
      Title: AtMYB2 transcription factor can interact with the CMO promoter and regulate its downstream gene expression.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_119135.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables choline monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in glycine betaine biosynthetic process from choline IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    choline monooxygenase, putative (CMO-like)
    NP_194718.2
    • choline monooxygenase, putative (CMO-like); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, iron ion binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: oxidation reduction, cellular aromatic compound metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Aromatic-ring-hydroxylating dioxygenase, alpha subunit (InterPro:IPR001663); Has 7402 Blast hits to 7400 proteins in 1015 species: Archae - 31; Bacteria - 4374; Metazoa - 10; Fungi - 153; Plants - 102; Viruses - 0; Other Eukaryotes - 2732 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14608833..14610998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119135.4 → NP_194718.2  choline monooxygenase, putative (CMO-like) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194718.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0IGK3, Q9SZR0
      UniProtKB/TrEMBL
      Q8H944
      Conserved Domains (3) summary
      cd08883
      Location:245 → 421
      RHO_alpha_C_CMO-like; C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases
      COG4638
      Location:69 → 406
      HcaE; Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit [Inorganic ion transport and metabolism, General function prediction only]
      cd03541
      Location:95 → 212
      Rieske_RO_Alpha_CMO; Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZR0.2

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