U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tic22-IV Tic22-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829471, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Tic22-IV
    Official Full Name
    Tic22-like family protein
    Primary source
    TAIR:AT4G33350
    Locus tag
    AT4G33350
    See related
    Araport:AT4G33350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTic22-IV; F17M5.110; F17M5_110; translocon at the inner envelope membrane of chloroplasts 22-IV
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tic22-IV in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (16064437..16066897, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene myosin-4 protein (DUF641) Neighboring gene plant glycogenin-like starch initiation protein 3 Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene DEA(D/H)-box RNA helicase family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evolutionary, molecular and genetic analyses of Tic22 homologues in Arabidopsis thaliana chloroplasts. Kasmati AR, et al. PLoS One, 2013. PMID 23675512, Free PMC Article
    2. In vivo function of Tic22, a protein import component of the intermembrane space of chloroplasts. Rudolf M, et al. Mol Plant, 2013 May. PMID 23204504
    3. OEP61 is a chaperone receptor at the plastid outer envelope. von Loeffelholz O, et al. Biochem J, 2011 Aug 15. PMID 21612577, Free PMC Article
    4. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230
    5. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The two Tic22 isoforms act redundantly in chloroplast protein import, and their function is non-essential but nonetheless required for normal chloroplast biogenesis, particularly during early plant development. [Tic22-IV]
      Title: Evolutionary, molecular and genetic analyses of Tic22 homologues in Arabidopsis thaliana chloroplasts.
    2. Tic22 is directly involved in chloroplast preprotein import. [Tic22-IV]
      Title: In vivo function of Tic22, a protein import component of the intermembrane space of chloroplasts.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001203972.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Tic22-like family protein
    NP_001190901.1
    • Tic22-like family protein; LOCATED IN: chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloroplast protein import component Tic22 (InterPro:IPR005692), Tic22-like (InterPro:IPR007378); BEST Arabidopsis thaliana protein match is: Tic22-like family protein (TAIR:AT3G23710.1).
    NP_195061.1
    • Tic22-like family protein; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloroplast protein import component Tic22 (InterPro:IPR005692), Tic22-like (InterPro:IPR007378); BEST Arabidopsis thaliana protein match is: Tic22-like family protein (TAIR:AT3G23710.1); Has 113 Blast hits to 113 proteins in 40 species: Archae - 0; Bacteria - 48; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16064437..16066897 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119489.4 → NP_195061.1  Tic22-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195061.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JIW4, Q9SZB2
      UniProtKB/TrEMBL
      A0A178UWE7, A0A5S9XY79
      Conserved Domains (1) summary
      TIGR00995
      Location:1 → 268
      3a0901s06TIC22; chloroplast protein import component, Tic22 family

    2. NM_001203972.1 → NP_001190901.1  Tic22-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190901.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZB2
      Conserved Domains (1) summary
      TIGR00995
      Location:1 → 242
      3a0901s06TIC22; chloroplast protein import component, Tic22 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZB2.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools