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    EIF3K eukaryotic translation initiation factor 3K [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829461, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EIF3K
    Official Full Name
    eukaryotic translation initiation factor 3K
    Primary source
    TAIR:AT4G33250
    Locus tag
    AT4G33250
    See related
    Araport:AT4G33250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTIF3K1; eukaryotic translation initiation factor 3K; F17M5.10; F17M5_10; TIF3K1
    Summary
    Encodes initiation factor 3k (EIF3k).
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    Genomic context

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    See EIF3K in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (16038651..16040808, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pectin methylesterase 44 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily Neighboring gene 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A Neighboring gene ncRNA Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene Transducin family protein / WD-40 repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant initiation factor 3 subunit composition resembles mammalian initiation factor 3 and has a novel subunit. Burks EA, et al. J Biol Chem, 2001 Jan 19. PMID 11042177
    2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119479.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables translation initiation factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of eukaryotic translation initiation factor 3 complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 3K
    NP_195051.1
    • eukaryotic translation initiation factor 3K (EIF3K); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Translation initiation factor 3, subunit 12, N-terminal, eukaryotic (InterPro:IPR016020), Translation initiation factor 3, subunit 12, eukaryotic (InterPro:IPR009374), Armadillo-type fold (InterPro:IPR016024), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); Has 423 Blast hits to 423 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 100; Plants - 89; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16038651..16040808 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119479.4 → NP_195051.1  eukaryotic translation initiation factor 3K [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195051.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZA3
      UniProtKB/TrEMBL
      A0A178UVY9, A0A5S9XYJ7, A0A654FV66
      Conserved Domains (1) summary
      cl24019
      Location:67 → 194
      CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZA3.1

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