U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SEN1 Rhodanese/Cell cycle control phosphatase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829730, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SEN1
    Official Full Name
    Rhodanese/Cell cycle control phosphatase superfamily protein
    Primary source
    TAIR:AT4G35770
    Locus tag
    AT4G35770
    See related
    Araport:AT4G35770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA SENESCENCE 1; ATSEN1; DARK INDUCIBLE 1; DIN1; F4B14.3; SENESCENCE 1; SENESCENCE ASSOCIATED GENE 1
    Summary
    Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SEN1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (16944878..16946266)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene DEAD/DEAH box RNA helicase family protein Neighboring gene SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Neighboring gene NAD(P)H dehydrogenase (quinone)s Neighboring gene ACT-like protein tyrosine kinase family protein Neighboring gene ROTUNDIFOLIA like 6

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The delayed leaf senescence mutants of Arabidopsis, ore1, ore3, and ore9 are tolerant to oxidative stress. Woo HR, et al. Plant Cell Physiol, 2004 Jul. PMID 15295076
    2. Intracellular localization of Arabidopsis sulfurtransferases. Bauer M, et al. Plant Physiol, 2004 Jun. PMID 15181206, Free PMC Article
    3. Arabidopsis DCP2, DCP1, and VARICOSE form a decapping complex required for postembryonic development. Xu J, et al. Plant Cell, 2006 Dec. PMID 17158604, Free PMC Article
    4. Overexpression of Arabidopsis acyl-CoA binding protein ACBP3 promotes starvation-induced and age-dependent leaf senescence. Xiao S, et al. Plant Cell, 2010 May. PMID 20442372, Free PMC Article
    5. Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions. Devoto A, et al. Plant Mol Biol, 2005 Jul. PMID 16021335

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001085027.2
    NM_001085028.1
    NM_001342368.1
    NM_001342369.1
    NM_001342370.1
    NM_119743.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to oxidative stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Rhodanese/Cell cycle control phosphatase superfamily protein
    NP_001078496.1
    • SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase protein 16 (TAIR:AT5G66040.1); Has 254 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 104; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    NP_001078497.1
    • SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase protein 16 (TAIR:AT5G66040.1); Has 257 Blast hits to 257 proteins in 81 species: Archae - 0; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    NP_195302.1
    • SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase protein 16 (TAIR:AT5G66040.1); Has 1680 Blast hits to 1680 proteins in 570 species: Archae - 16; Bacteria - 1250; Metazoa - 4; Fungi - 10; Plants - 192; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16944878..16946266
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119743.4 → NP_195302.1  Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195302.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JNT6, Q38852, Q38853, Q8LEW3
      UniProtKB/TrEMBL
      A0A178UYD5, A0A5S9Y169
      Conserved Domains (1) summary
      cl00125
      Location:64 → 182
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

    2. NM_001085027.2 → NP_001078496.1  Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078496.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZU9
      Conserved Domains (1) summary
      cl00125
      Location:64 → 159
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

    3. NM_001342368.1 → NP_001328861.1  Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5Y0, C0Z358

    4. NM_001342370.1 → NP_001328859.1  Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5Y0, C0Z358

    5. NM_001342369.1 → NP_001328860.1  Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B5Y3

    6. NM_001085028.1 → NP_001078497.1  Rhodanese/Cell cycle control phosphatase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078497.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRI9
      Conserved Domains (1) summary
      cl00125
      Location:64 → 161
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q38853.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.