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    PHB5 prohibitin 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831280, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PHB5
    Official Full Name
    prohibitin 5
    Primary source
    TAIR:AT5G14300
    Locus tag
    AT5G14300
    See related
    Araport:AT5G14300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPHB5; F18O22.90; F18O22_90; prohibitin 5
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    Genomic context

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    See PHB5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (4613102..4614023)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DNA-binding storekeeper Neighboring gene ncRNA Neighboring gene Mitochondrial ribosomal protein L37 Neighboring gene carboxyesterase 16 Neighboring gene Ribosomal protein S13/S18 family Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mitochondrial type-I prohibitins of Arabidopsis thaliana are required for supporting proficient meristem development. Van Aken O, et al. Plant J, 2007 Dec. PMID 17883375
    2. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prohibitin 5
    NP_196934.1
    • prohibitin 5 (PHB5); CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 4 (TAIR:AT3G27280.1); Has 2683 Blast hits to 2683 proteins in 797 species: Archae - 146; Bacteria - 1077; Metazoa - 455; Fungi - 281; Plants - 201; Viruses - 7; Other Eukaryotes - 516 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4613102..4614023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121434.1 → NP_196934.1  prohibitin 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196934.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LY99
      UniProtKB/TrEMBL
      A0A178UG00
      Conserved Domains (2) summary
      smart00244
      Location:24 → 158
      PHB; prohibitin homologues
      cd03401
      Location:24 → 192
      SPFH_prohibitin; Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LY99.1

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