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    TET12 tetraspanin12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832367, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TET12
    Official Full Name
    tetraspanin12
    Primary source
    TAIR:AT5G23030
    Locus tag
    AT5G23030
    See related
    Araport:AT5G23030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MYJ24.2; MYJ24_2; tetraspanin12
    Summary
    Member of TETRASPANIN family
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    Genomic context

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    See TET12 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (7726702..7728369)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene methylthioalkylmalate synthase 1 Neighboring gene 2-isopropylmalate synthase 2 Neighboring gene Putative membrane lipoprotein Neighboring gene cell growth defect factor-like protein (DUF3353) Neighboring gene acyl-activating enzyme 17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_122209.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in auxin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tetraspanin12
    NP_197694.1
    • tetraspanin12 (TET12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin11 (TAIR:AT1G18520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7726702..7728369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122209.4 → NP_197694.1  tetraspanin12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197694.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FN51
      UniProtKB/TrEMBL
      A0A178U8Y6, A0A5S9Y6H8, A0A654G440
      Conserved Domains (1) summary
      pfam00335
      Location:5 → 227
      Tetraspannin; Tetraspanin family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FN51.1

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