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    ion channel POLLUX-like protein, putative (DUF1012) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834395, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ion channel POLLUX-like protein, putative (DUF1012)
    Primary source
    TAIR:AT5G43745
    Locus tag
    AT5G43745
    See related
    Araport:AT5G43745
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    23
    Sequence:
    Chromosome: 5; NC_003076.8 (17569147..17575051, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene rRNA-processing EFG1-like protein (DUF2361) Neighboring gene ncRNA Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene Disease resistance protein (CC-NBS-LRR class) family Neighboring gene NAD(P)H dehydrogenase 18 Neighboring gene non-LTR retrolelement reverse transcriptase-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two plastid POLLUX ion channel-like proteins are required for stress-triggered stromal Ca2+release. Völkner C, et al. Plant Physiol, 2021 Dec 4. PMID 34618095, Free PMC Article
    2. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    3. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_123741.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast envelope HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 
    located_in plastid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ion channel POLLUX-like protein, putative (DUF1012)
    NP_568628.1
    • Protein of unknown function (DUF1012); LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17569147..17575051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123741.3 → NP_568628.1  ion channel POLLUX-like protein, putative (DUF1012) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568628.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8W4D3, Q940Y9
      UniProtKB/TrEMBL
      A0A5S9YAR3, A0A654G880, A0A7G2FDE7
      Conserved Domains (1) summary
      cl29357
      Location:411 → 503
      BK_channel_a; Calcium-activated BK potassium channel alpha subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q940Y9.1

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