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    transcription elongation factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834843, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription elongation factor
    Primary source
    TAIR:AT5G47920
    Locus tag
    AT5G47920
    See related
    Araport:AT5G47920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MCA23.26; MCA23_26
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (19403171..19404147, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) Neighboring gene respiratory burst oxidase homologue D Neighboring gene Zinc-binding ribosomal protein family protein Neighboring gene 40S ribosomal protein S27

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_124166.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    transcription elongation factor
    NP_199603.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19403171..19404147 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124166.3 → NP_199603.1  transcription elongation factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199603.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9YCA4, A0A654G9I8, Q9FII9
      Conserved Domains (1) summary
      pfam05553
      Location:150 → 184
      DUF761; Cotton fibre expressed protein
    Nucleotide Protein
    Heading Accession and Version

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