U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    YUC10 Flavin-containing monooxygenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841313, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    YUC10
    Official Full Name
    Flavin-containing monooxygenase family protein
    Primary source
    TAIR:AT1G48910
    Locus tag
    AT1G48910
    See related
    Araport:AT1G48910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27K7.7; F27K7_7; YUCCA 10
    Summary
    A paternally expressed imprinted gene.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See YUC10 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (18091681..18093878)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene TRICHOME BIREFRINGENCE-LIKE 7 Neighboring gene pseudo Neighboring gene Signal recognition particle, SRP54 subunit protein Neighboring gene uncharacterized protein Neighboring gene nucleolin like 1 Neighboring gene glycosyl hydrolase 9C1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The viral suppressor HCPro decreases DNA methylation and activates auxin biosynthesis genes. Yang L, et al. Virology, 2020 Jul. PMID 32452413
    2. Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis. Cheng Y, et al. Plant Cell, 2007 Aug. PMID 17704214, Free PMC Article
    3. Activation-tagged suppressors of a weak brassinosteroid receptor mutant. Kang B, et al. Mol Plant, 2010 Jan. PMID 19995721, Free PMC Article
    4. An Improved Recombineering Toolset for Plants. Brumos J, et al. Plant Cell, 2020 Jan. PMID 31666295, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The viral suppressor HCPro decreases DNA methylation and activates auxin biosynthesis genes.
      Title: The viral suppressor HCPro decreases DNA methylation and activates auxin biosynthesis genes.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables indole-3-pyruvate monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in auxin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of anatomical structure morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to ethylene IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Flavin-containing monooxygenase family protein
    NP_175321.1
    • YUC10; FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: regulation of anatomical structure morphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G21430.1); Has 10747 Blast hits to 10734 proteins in 1402 species: Archae - 41; Bacteria - 5770; Metazoa - 759; Fungi - 1564; Plants - 638; Viruses - 0; Other Eukaryotes - 1975 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18091681..18093878
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103784.2 → NP_175321.1  Flavin-containing monooxygenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175321.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FVQ0
      UniProtKB/TrEMBL
      A0A5S9WMV0
      Conserved Domains (2) summary
      COG2072
      Location:5 → 350
      CzcO; Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism]
      cl21454
      Location:6 → 184
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FVQ0.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.