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    VPS9B vacuolar protein sorting-associated 9A-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830791, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VPS9B
    Official Full Name
    vacuolar protein sorting-associated 9A-like protein
    Primary source
    TAIR:AT5G09320
    Locus tag
    AT5G09320
    See related
    Araport:AT5G09320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T5E8.120; T5E8_120
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    Genomic context

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    See VPS9B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (2890102..2892094, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene gamma-secretase subunit Neighboring gene vacuolar sorting protein 9 domain protein Neighboring gene NAC domain containing protein 82 Neighboring gene Ubiquitin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_120968.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated 9A-like protein
    NP_196494.2
    • VPS9B; CONTAINS InterPro DOMAIN/s: Vacuolar sorting protein 9, subgroup (InterPro:IPR013995), Vacuolar sorting protein 9 (InterPro:IPR003123); BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT3G19770.1); Has 1393 Blast hits to 1376 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 508; Fungi - 217; Plants - 509; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2890102..2892094 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120968.3 → NP_196494.2  vacuolar protein sorting-associated 9A-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGF7, F4KCK0
      Conserved Domains (2) summary
      pfam02204
      Location:133 → 238
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:24 → 88
      DUF5601; Domain of unknown function (DUF5601)
    Nucleotide Protein
    Heading Accession and Version

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