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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827059, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT4G14190
    Locus tag
    AT4G14190
    See related
    Araport:AT4G14190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3135C; FCAALL.115
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (8183227..8185202, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene F-box family protein-like protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene putative recombination initiation defect 1 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene phytoene desaturase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • At4g14190_Arabidopsis_lyrata_ssp._lyrata_CAN11 (e-PCR)
    • At4g14190_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_117496.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_193155.4
    • Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G42630.1); Has 17113 Blast hits to 6259 proteins in 178 species: Archae - 1; Bacteria - 6; Metazoa - 71; Fungi - 33; Plants - 16698; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8183227..8185202 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117496.6 → NP_193155.4  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193155.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23278
      UniProtKB/TrEMBL
      A0A7G2F0K9
      Conserved Domains (3) summary
      TIGR00756
      Location:169 → 200
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:169 → 196
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:165 → 214
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23278.2

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