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    LDL3 LSD1-like 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827325, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LDL3
    Official Full Name
    LSD1-like 3
    Primary source
    TAIR:AT4G16310
    Locus tag
    AT4G16310
    See related
    Araport:AT4G16310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4185W; FCAALL.342; LSD1-like 3
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    Genomic context

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    See LDL3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (9217988..9226280)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene flowering time control protein FCA Neighboring gene S-protein homologue 1 Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein Neighboring gene calcineurin B-like protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Primed histone demethylation regulates shoot regenerative competency. Ishihara H, et al. Nat Commun, 2019 Apr 16. PMID 30992430, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341093.1
    NM_001341096.1
    NM_117726.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    LSD1-like 3
    NP_001319957.1
    • LSD1-like 3 (LDL3); FUNCTIONS IN: primary amine oxidase activity; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Adrenodoxin reductase (InterPro:IPR000759), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family protein (TAIR:AT3G10390.1); Has 1823 Blast hits to 1718 proteins in 423 species: Archae - 23; Bacteria - 1184; Metazoa - 118; Fungi - 119; Plants - 329; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9217988..9226280
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341094.1 → NP_001328665.1  LSD1-like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D2CJC4, F4JLS1, O23476, O23477, Q5BPL0
      UniProtKB/TrEMBL
      A0A5S9XTU1, A0A654FPU5
      Conserved Domains (1) summary
      PLN02976
      Location:1 → 1628
      PLN02976; amine oxidase

    2. NM_001341095.1 → NP_001328666.1  LSD1-like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D2CJC4, F4JLS1, O23476, O23477, Q5BPL0
      UniProtKB/TrEMBL
      A0A5S9XTU1, A0A654FPU5
      Conserved Domains (1) summary
      PLN02976
      Location:1 → 1628
      PLN02976; amine oxidase

    3. NM_001341093.1 → NP_001319957.1  LSD1-like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D2CJC4, F4JLS1, O23476, O23477, Q5BPL0
      UniProtKB/TrEMBL
      A0A5S9XTU1, A0A654FPU5
      Conserved Domains (1) summary
      PLN02976
      Location:1 → 1628
      PLN02976; amine oxidase

    4. NM_001341096.1 → NP_001328664.1  LSD1-like 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D2CJC4, F4JLS1, O23476, O23477, Q5BPL0
      UniProtKB/TrEMBL
      A0A5S9XTU1, A0A654FPU5
      Conserved Domains (1) summary
      PLN02976
      Location:1 → 1628
      PLN02976; amine oxidase

    5. NM_117726.5 → NP_193364.5  LSD1-like 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193364.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D2CJC4, F4JLS1, O23476, O23477, Q5BPL0
      UniProtKB/TrEMBL
      A0A5S9XTU1, A0A654FPU5
      Conserved Domains (1) summary
      PLN02976
      Location:1 → 1628
      PLN02976; amine oxidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JLS1.1

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