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    SCL13 SCARECROW-like 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827435, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SCL13
    Official Full Name
    SCARECROW-like 13
    Primary source
    TAIR:AT4G17230
    Locus tag
    AT4G17230
    See related
    Araport:AT4G17230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4650C; FCAALL.225; SCARECROW-like 13
    Summary
    Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.
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    Genomic context

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    See SCL13 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (9660593..9663809, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene weak chloroplast movement under blue light protein (DUF827) Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene microtubule-associated proteins 70-5 Neighboring gene structural maintenance of chromosomes protein Neighboring gene uncharacterized protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The GRAS protein SCL13 is a positive regulator of phytochrome-dependent red light signaling, but can also modulate phytochrome A responses. Torres-Galea P, et al. Mol Genet Genomics, 2006 Jul. PMID 16680434
    2. Transcriptional Profiling Reveals a Time-of-Day-Specific Role of REVEILLE 4/8 in Regulating the First Wave of Heat Shock-Induced Gene Expression in Arabidopsis. Li B, et al. Plant Cell, 2019 Oct. PMID 31358650, Free PMC Article
    3. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    4. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341195.1
    NM_117828.8

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SCARECROW-like 13
    NP_193456.4
    • SCARECROW-like 13 (SCL13); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow-like 5 (TAIR:AT1G50600.1); Has 2512 Blast hits to 2467 proteins in 302 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2508; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9660593..9663809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117828.8 → NP_193456.4  SCARECROW-like 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193456.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JNF6, O23566, Q8W584, Q9M0M5, Q9XE57
      UniProtKB/TrEMBL
      A0A178UVK6, A0A1P8B5A9
      Conserved Domains (1) summary
      pfam03514
      Location:155 → 525
      GRAS; GRAS domain family

    2. NM_001341195.1 → NP_001328648.1  SCARECROW-like 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JNF6, O23566, Q8W584, Q9M0M5, Q9XE57
      UniProtKB/TrEMBL
      A0A178UVK6, A0A1P8B5A9
    Nucleotide Protein
    Heading Accession and Version

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