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    Oxoglutarate/iron-dependent oxygenase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828665, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Oxoglutarate/iron-dependent oxygenase
    Primary source
    TAIR:AT4G25600
    Locus tag
    AT4G25600
    See related
    Araport:AT4G25600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    M7J2.30; M7J2_30
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (13060612..13062680)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Ser Neighboring gene actin depolymerizing factor 7 Neighboring gene C2H2-like zinc finger protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene fibrillarin 2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001341755.1
    NM_001341756.1
    NM_118692.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables procollagen-proline 4-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Oxoglutarate/iron-dependent oxygenase
    NP_194290.2
    • Oxoglutarate/iron-dependent oxygenase; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28480.1); Has 1193 Blast hits to 1161 proteins in 233 species: Archae - 0; Bacteria - 285; Metazoa - 424; Fungi - 0; Plants - 372; Viruses - 8; Other Eukaryotes - 104 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13060612..13062680
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341754.1 → NP_001329146.1  Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0P1, A0A1P8B6U0

    2. NM_118692.3 → NP_194290.2  Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194290.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65602, Q8GXT7, Q9M0K1
      UniProtKB/TrEMBL
      A0A5S9XXY9, A0A654FSQ1
      Conserved Domains (2) summary
      smart00254
      Location:251 → 291
      ShKT; ShK toxin domain
      cl21496
      Location:159 → 237
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    3. NM_001341755.1 → NP_001329147.1  Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0P1, A0A1P8B6T8

    4. NM_001341756.1 → NP_001329145.1  Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0P1, A0A1P8B6T9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GXT7.1

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