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    C2H2-like zinc finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828666, updated on 18-Sep-2024

    Summary

    Official Full Name
    C2H2-like zinc finger protein
    Primary source
    TAIR:AT4G25610
    Locus tag
    AT4G25610
    See related
    Araport:AT4G25610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    M7J2.20; M7J2_20
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    Genomic context

    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (13063227..13067228)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene actin depolymerizing factor 7 Neighboring gene Oxoglutarate/iron-dependent oxygenase Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene fibrillarin 2 Neighboring gene ncRNA Neighboring gene tRNA-Leu Neighboring gene detoxifying efflux carrier 35

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001160796.1
    NM_001341757.1
    NM_118693.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
     
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    C2H2-like zinc finger protein
    NP_001154268.1
    • C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); Has 400 Blast hits to 392 proteins in 117 species: Archae - 0; Bacteria - 39; Metazoa - 136; Fungi - 49; Plants - 38; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
    NP_194291.2
    • C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); Has 1178 Blast hits to 1100 proteins in 218 species: Archae - 0; Bacteria - 148; Metazoa - 375; Fungi - 111; Plants - 98; Viruses - 2; Other Eukaryotes - 444 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13063227..13067228
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118693.6NP_194291.2  C2H2-like zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194291.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US32, A0A384LH20, A0A5S9XWP5, Q8RXF0
      Conserved Domains (1) summary
      pfam00096
      Location:6283
      zf-C2H2; Zinc finger, C2H2 type
    2. NM_001160796.1NP_001154268.1  C2H2-like zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154268.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F2F6, F4JTA8
    3. NM_001341757.1NP_001328116.1  C2H2-like zinc finger protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US32, A0A384LH20, A0A5S9XWP5, Q8RXF0
      Conserved Domains (1) summary
      pfam00096
      Location:6283
      zf-C2H2; Zinc finger, C2H2 type