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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_042181.1 RefSeqGene
- Range
-
4855..126582
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001424113.1 → NP_001411042.1 collagen alpha-1(XII) chain isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) encodes the longest isoform (3).
- Source sequence(s)
-
AL080250, AL096771, AL354664
- UniProtKB/TrEMBL
-
D6RGG3
- Related
- ENSP00000421216.1, ENST00000483888.6
-
NM_001424114.1 → NP_001411043.1 collagen alpha-1(XII) chain isoform 4 precursor
Status: REVIEWED
- Source sequence(s)
-
AL080250, AL096771, AL354664
- UniProtKB/TrEMBL
-
D6RGG3
-
NM_001424115.1 → NP_001411044.1 collagen alpha-1(XII) chain isoform 5 precursor
Status: REVIEWED
- Source sequence(s)
-
AL080250, AL096771, AL354664
- UniProtKB/TrEMBL
-
D6RGG3
-
NM_001424116.1 → NP_001411045.1 collagen alpha-1(XII) chain isoform 6 precursor
Status: REVIEWED
- Source sequence(s)
-
AL080250, AL096771
- UniProtKB/TrEMBL
-
B9EJB8
-
NM_004370.6 → NP_004361.3 collagen alpha-1(XII) chain long isoform precursor
See identical proteins and their annotated locations for NP_004361.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (long) represents a transcript that encodes an isoform longer than that of the short isoform.
- Source sequence(s)
-
AI752603, AL080250, AL096771, AL354664, BP286308, DA661773, U73778
- Consensus CDS
-
CCDS43482.1
- UniProtKB/Swiss-Prot
- O43853, Q15955, Q5VYK1, Q5VYK2, Q71UR3, Q99715, Q99716
- UniProtKB/TrEMBL
-
D6RGG3
- Related
- ENSP00000325146.8, ENST00000322507.13
- Conserved Domains (6) summary
-
- pfam01391
Location:2765 → 2891
- Collagen; Collagen triple helix repeat (20 copies)
- smart00060
Location:1474 → 1548
- FN3; Fibronectin type 3 domain
- smart00210
Location:2520 → 2712
- TSPN; Thrombospondin N-terminal -like domains
- cd00063
Location:2118 → 2197
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd01482
Location:1198 → 1361
- vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
- pfam00041
Location:1754 → 1834
- fn3; Fibronectin type III domain
-
NM_080645.3 → NP_542376.2 collagen alpha-1(XII) chain short isoform precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (short) lacks multiple exons in the 5' coding region compared to the long variant. The encoded isoform (short) is shorter but has identical N-and C-termini compared to the long isoform.
- Source sequence(s)
-
AI752603, AL080250, AL096771, DA661773, U73778
- Consensus CDS
-
CCDS43481.1
- UniProtKB/TrEMBL
-
B9EJB8
- Related
- ENSP00000305147.9, ENST00000345356.10
- Conserved Domains (6) summary
-
- pfam01391
Location:1705 → 1733
- Collagen; Collagen triple helix repeat (20 copies)
- smart00060
Location:310 → 384
- FN3; Fibronectin type 3 domain
- smart00210
Location:1356 → 1548
- TSPN; Thrombospondin N-terminal -like domains
- cd00063
Location:954 → 1033
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd01482
Location:34 → 197
- vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
- pfam00041
Location:590 → 670
- fn3; Fibronectin type III domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
75084326..75206053 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011535435.2 → XP_011533737.1 collagen alpha-1(XII) chain isoform X3
- UniProtKB/TrEMBL
-
D6RGG3
- Conserved Domains (6) summary
-
- pfam01391
Location:2674 → 2800
- Collagen; Collagen triple helix repeat (20 copies)
- smart00060
Location:1383 → 1457
- FN3; Fibronectin type 3 domain
- smart00210
Location:2429 → 2621
- TSPN; Thrombospondin N-terminal -like domains
- cd00063
Location:2027 → 2106
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd01482
Location:1107 → 1270
- vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
- pfam00041
Location:1663 → 1743
- fn3; Fibronectin type III domain
-
XM_047418186.1 → XP_047274142.1 collagen alpha-1(XII) chain isoform X6
- UniProtKB/TrEMBL
-
B9EJB8
-
XM_047418184.1 → XP_047274140.1 collagen alpha-1(XII) chain isoform X1
- UniProtKB/TrEMBL
-
D6RGG3
-
XM_017010252.3 → XP_016865741.1 collagen alpha-1(XII) chain isoform X2
- UniProtKB/TrEMBL
-
D6RGG3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
76261502..76383203 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054354234.1 → XP_054210209.1 collagen alpha-1(XII) chain isoform X3
- UniProtKB/TrEMBL
-
D6RGG3
-
XM_054354232.1 → XP_054210207.1 collagen alpha-1(XII) chain isoform X1
- UniProtKB/TrEMBL
-
D6RGG3
-
XM_054354237.1 → XP_054210212.1 collagen alpha-1(XII) chain isoform X6
- UniProtKB/TrEMBL
-
B9EJB8
-
XM_054354233.1 → XP_054210208.1 collagen alpha-1(XII) chain isoform X2
- UniProtKB/TrEMBL
-
D6RGG3